Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy01g00604 ATGTACCAGTTGAATAAGGAGCAAAAGTTTTTGATTGGTGTTATCCTGATGGTCCCGACTTATGGTGTTGAATCATTTGTATCATTGGTGTACCCATCAATAAGTGTTTATCTTGAGATACTACGCGATTGCTATGAATCCTTCGCAATGTACTGCTTTGGACGATACCTGGTTGCTTGCTTGGGTGGAGAAGAAGGAACTATTGCATTTTTAGAGAGAGAAGGACGTTCAAATACTAAGACACCTTTATTAGAACATAGCTCAGAAAAGGGAACCATCAAACATGTTTTCCCTATGAACCTTTTCTTAAAGCCGTGGAAAATTGGTGGATGGGTTTACCATGTCATCAAAATTGGAATCGTCCAATATATGATGATAAAGTCCCTCACTTCTATTTTAGCTGTAGTTCTTGAGAACTTTGGTGTTTATTGTGAAGGAGACTTTAATTTCAAATGCGGGTATCCTTATATGGCAGTGGTTTTAAATTTCAGTCAAACATGGGCACTGTACTGCCTGATTCAGTTCTATACAGTTACAAAGGATGAATTGGTACATATAAAGCCATTGGCCAAATTTTTGATGTTTAAATCTATAGTATTTTTGACTTGGTGGCAAGGTGTTGGAATTGCTCTCCTATCTGCCTTCGATTTGTTCAGGAGTCCTGTAGCCCAAGGGTTACAGTTTAAGTCAAGTGTCCAAGATTTCATCATTTGTATAGAGATGGCCATTGCTTCAGTGATTCACTTGTATGTATTTACTGCAAAACCCTATGAACTTATGGGGGACCGTTATCCTGGAAGTGTTTCTGTTCTTGGCGATTATGCATCCGTTGACTGTCCTTTAGATCCAGACGAGGTTCGGGATAGCGAGCGTCCTACAAAATTACGCCTACCTCAACCTGACCTTGAAGACCAAGACCCCAAAATGGGAATGACAATCAAAGAGAGTGTTCGAGATGTTTTTGTTGGTGGTGGGGGCTATATTGTGAGCGACCTGAAATTCACGGTAAACCAAGCAGTCGAACCTATGGAAAAAGGAATAACAAAGTTCAACGAAAAACTACAGAAGCTCTCCCAAAACATTAAGAAACGTGACAAGGATAAAAGAAGAACAAAGGATGACAGTTGTATCACGTCGCCCACACGAAAACTCATTCGAGGAATCGATGACCCCCTTTTGAATGGGAGCTATAGTGATAGTGGGGTCGTAAGAGAAAAGAAGAACCGTCGTAAATCAGGTTATATAAGTGCAGAAAGTGGCGGAGAAAGCAGCAGTGATCACGGTTATGGCAAGTACCAAGTTGGGGGCCGCCGGTGGATCACCAAAGACTAG 1332 41.14 MYQLNKEQKFLIGVILMVPTYGVESFVSLVYPSISVYLEILRDCYESFAMYCFGRYLVACLGGEEGTIAFLEREGRSNTKTPLLEHSSEKGTIKHVFPMNLFLKPWKIGGWVYHVIKIGIVQYMMIKSLTSILAVVLENFGVYCEGDFNFKCGYPYMAVVLNFSQTWALYCLIQFYTVTKDELVHIKPLAKFLMFKSIVFLTWWQGVGIALLSAFDLFRSPVAQGLQFKSSVQDFIICIEMAIASVIHLYVFTAKPYELMGDRYPGSVSVLGDYASVDCPLDPDEVRDSERPTKLRLPQPDLEDQDPKMGMTIKESVRDVFVGGGGYIVSDLKFTVNQAVEPMEKGITKFNEKLQKLSQNIKKRDKDKRRTKDDSCITSPTRKLIRGIDDPLLNGSYSDSGVVREKKNRRKSGYISAESGGESSSDHGYGKYQVGGRRWITKD* 444
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4303522 4308547 + Chy1G006040.1 Chy01g00604 217785

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy01g00604 443 MobiDBLite consensus disorder prediction 396 443 - -
Chy01g00604 443 Pfam Organic solute transporter Ostalpha 2 257 IPR005178 -
Chy01g00604 443 PANTHER ORGANIC SOLUTE TRANSPORTER-RELATED 2 436 IPR005178 -
Chy01g00604 443 Coils Coil 347 367 - -
Chy01g00604 443 MobiDBLite consensus disorder prediction 281 307 - -
Chy01g00604 443 PANTHER PROTEIN LAZ1 2 436 IPR031171 GO:0009626
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy01g00604 - - - csv:101217133 879.782
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g00604 Chy-Chr1:4303522 Chy03g00590 Chy-Chr3:8446379 1.49E-147 dispersed
Chy01g00604 Chy-Chr1:4303522 Chy04g00594 Chy-Chr4:6523926 1.12E-22 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g279 . . . . . Bpe12g00146 . . Cmo19g00812 Cmo11g01781 . . . . . . Cpe15g00635 Bhi05g01598 . . . . . . Cla02g00356 Cam02g0364 Cec02g0365 Cco02g0372 Clacu02g0356 Cmu02g0353 Cre02g0683 . . . . . Csa07g00177 . Cme01g01155 . Blo13g00478 . . . . . Bma08g00721 . . . Cma11g01338 . Car11g01409 Car19g00608 . . . . . . . . . . . . . . . . Lsi11g01278 . Chy01g00604 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007981 0 8 1 1 1 1 2 1 1 1 1 1 1 1 0 2 1 1 1 1 1 1 1 1 0 1 0 1 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy01g00604 Chy_Chr01 FPKM 10.201369 11.215699 47.315685 43.666924 29.566757 30.533041 29.628088 31.546461 30.762545 27.215828