Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy01g00623 ATGGATTCCTTCGCTGCAAACTCAAAGAAGTCATTCCATATCCGCTCAAACAGCTTGCCTTCAAAGCCACATCCAGTTGTTGCTGAAGTCAATGAACGTCTTTGCAGATTGCAGGGCTCTGAAGCCACCACATCTTCATCCTCTACTTTGTGCCAAAAACTTGATGGTCTCCAAGATTTACATGATTGCATTGACAAGTTGCTTCTTTTACCACTCACTCATCAAGCTCTTATTGACAACAAGTCTGTTGATGACTTACTCGAAGGATCTCTCAAGATCTTGGATGTGTGTGCTTTGGCTAAGGATGTTTTATCACAAATGAAAGAATCTGCACACGAGCTTGAGTCCACTTTGCGACGAAGAAAAGATGGCATGATTGATGTTAAAAAGTATTTGAACTCAAGGAAGATGATGAAAAAGGCAATCCACAAGGCCTTGAAGGGAATGGAAAAGGCAAGTTCCCAAAAAGAGGCAGAAACCGTTACATATAACAGCATTGAATCCTTGTTGTCGTTTGTAGCAGGACCAAAGTTGCCATCAAAGATGAGCAAATGGTCTTTGGTTTCTAAGTTGAAGCAACCTAAGAGAGTAGCCTGCAAAGATGATTCCACATATGGAAATGAAGTAGAGATGGTGGATGCTGCATTAAATACAATCACCAATCACAAATTTGATTTCCTTGCACAAGGTGAAGATGTCCAAAACTCACTGAGGAAATTGGAGTTGTGTATTCATGACATTGAAAAAGATCTCGAGAGTCTACATCGCCATCTTATCAAAAACAGAGTCTCATTTCTTAACATCCTAAATCACTAA 816 40.07 MDSFAANSKKSFHIRSNSLPSKPHPVVAEVNERLCRLQGSEATTSSSSTLCQKLDGLQDLHDCIDKLLLLPLTHQALIDNKSVDDLLEGSLKILDVCALAKDVLSQMKESAHELESTLRRRKDGMIDVKKYLNSRKMMKKAIHKALKGMEKASSQKEAETVTYNSIESLLSFVAGPKLPSKMSKWSLVSKLKQPKRVACKDDSTYGNEVEMVDAALNTITNHKFDFLAQGEDVQNSLRKLELCIHDIEKDLESLHRHLIKNRVSFLNILNH* 272
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4388662 4389512 + Chy1G006230.1 Chy01g00623 217804

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy01g00623 271 Pfam Protein BPS1 53 268 IPR004320 GO:0048364|GO:0048367
Chy01g00623 271 PANTHER DUF241 DOMAIN PROTEIN 8 270 - -
Chy01g00623 271 PANTHER BPS1-LIKE PROTEIN 8 270 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy01g00623 - - - csv:116405105 486.878
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g00623 Chy-Chr1:4388662 Chy01g00625 Chy-Chr1:4396442 0 dispersed
Chy01g00622 Chy-Chr1:4386142 Chy01g00623 Chy-Chr1:4388662 2.29E-108 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g249 . . . . . . . . Cmo19g00804 . . . . . . . . Bhi05g01612 . . . . . . Cla02g00364 Cam02g0370 . . Clacu02g0364 Cmu02g0361 Cre02g0693 . . . . . Csa07g00167 . Cme01g01167 . . . . . . . . Sed01g0640 . . . Cma19g00789 . . . . Bhi10g01228 Tan05g1071 Cmetu11g0337 . Hepe08g0329 . . . . . . . . . Lsi11g01269 . Chy01g00623 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000131 0 12 1 2 2 1 0 6 0 11 11 12 8 12 12 15 12 2 0 13 11 10 0 12 9 11 7 11 8 6 217
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy01g00623 Chy_Chr01 FPKM 46.487671 49.255089 45.502083 43.897068 77.394829 93.059601 74.800011 59.835251 62.795429 52.250652