Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy01g00625 ATGGATTCCTTTTCTGTAAACTCGAAGAAATCTTTCCACATTCGTTCAAACAGTTTGCCTTCAAAGCCACATCCAGTTGTGGATGAAGTTAATGAACATCTCTGCAGATTGAAGGCATCTGAAGAAGCCACTTCTTCATCCTCTTCTTTGTGCCAAAAACTTGATGGTCTCCAAGATTTACATGACTGCATTGATAAGTTGCTTCTTTTGCCACTCACCCATCAATCTCTTATAGACAACAAGTCTATTGATGACTTGCTTGAAGGATCTCTCAAGATCTTGGATGTGTGTGCTTTGGCTAAGGATGTTTTGTCACAAATGAAAGAATCTGCACACGAACTTGAGTCCGCTTTGCGCAGAAGAAAAGATGGCATGGTTCATATTCAGAAGTATCTGAACTCAAGGAAGATGATGAAAAAGGCAATCCACAAGGCCTTGAAGGGAATGGAAAAGGCAAGTTCCCAAAAAAGTGATGAAAGTTCAGAAATTGTTAGGTTGCTAAAGGAGGCAGAAACCGTTACATATAACAGCATTGAATCCTTGTTGTCGTTTGTAGCAGGACCAAAGTTGCCATCAAAGATGAGCAAATGGTCTTTGGTTTCTAAGTTGAAGCAACCTAAGAGAGTAGCCTGCAAAGATGATTCCACATATGGAAATGAAGTAGAGATGGTGGATGCTGCATTAAATACAATCACCAATCACAAATTTGATTTCCTTGCACAAGGTGAAGATGTCCAAAACTCACTGAGGAAATTGGAGTTGTGTATTCATGACATTGAAAAAGATCTCGAGAGTCTACATCGCCATCTTATCAAAAACAGAGTCTCATTTCTTAACATCCTAAATCACTAA 852 39.2 MDSFSVNSKKSFHIRSNSLPSKPHPVVDEVNEHLCRLKASEEATSSSSSLCQKLDGLQDLHDCIDKLLLLPLTHQSLIDNKSIDDLLEGSLKILDVCALAKDVLSQMKESAHELESALRRRKDGMVHIQKYLNSRKMMKKAIHKALKGMEKASSQKSDESSEIVRLLKEAETVTYNSIESLLSFVAGPKLPSKMSKWSLVSKLKQPKRVACKDDSTYGNEVEMVDAALNTITNHKFDFLAQGEDVQNSLRKLELCIHDIEKDLESLHRHLIKNRVSFLNILNH* 284
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4396442 4397293 + Chy1G006250.1 Chy01g00625 217806

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy01g00625 283 Coils Coil 149 169 - -
Chy01g00625 283 PANTHER BPS1-LIKE PROTEIN 8 282 - -
Chy01g00625 283 PANTHER DUF241 DOMAIN PROTEIN 8 282 - -
Chy01g00625 283 Pfam Protein BPS1 53 280 IPR004320 GO:0048364|GO:0048367
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy01g00625 - - - csv:116405105 523.472
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g00622 Chy-Chr1:4386142 Chy01g00625 Chy-Chr1:4396442 1.02E-115 dispersed
Chy01g00623 Chy-Chr1:4388662 Chy01g00625 Chy-Chr1:4396442 0 dispersed
Chy01g00625 Chy-Chr1:4396442 Chy01g00628 Chy-Chr1:4414154 1.70E-166 dispersed
Chy01g00625 Chy-Chr1:4396442 Chy01g00626 Chy-Chr1:4403349 5.04E-174 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g248 . . . . . . . . Cmo19g00803 . . . . . . . . Bhi05g01613 Tan02g0597 Cmetu01g0372 . . . . Cla02g00365 . . Cco02g0379 Clacu02g0365 Cmu02g0362 Cre02g0694 . . . . . Csa07g00165 . Cme01g01168 . . . . . . . . . . . . Cma19g00788 . . . . . . . . . . . . . . . . . . Lsi11g01268 . Chy01g00625 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000131 0 12 1 2 2 1 0 6 0 11 11 12 8 12 12 15 12 2 0 13 11 10 0 12 9 11 7 11 8 6 217
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy01g00625 Chy_Chr01 FPKM 26.980143 29.613331 120.408127 123.820389 22.475008 21.401651 21.962477 65.454407 65.861023 60.745174