Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy01g00627 ATGGATTCCATTGCTGCAAACTCGAAGAAATCGTTCCACATTCGTTCAAACAGTTTGCCCTCGAAGCCACATCCAGTTGTGGATGAAGTTAATGAAAATCTCTGCAGACTAAGAGCATCTGAAGAAGCCACTTCATCTTCTTCTTTGTGCCAAAAACTTGATGGTCTTCAAGATTTACATAATTCCATTGATAAGTTGCTTCTTTTGCCACTCACACATCAAGCTCTTGTTGACAACAAATCAGTTGATGACTTGTTAGAAGGATCTCTCAAGACCCTTGATGTGTGTGCTTTGGCTAAGGATGTTTTATCACAAATGAAAGAATCTGCACATGAACTTGAGTCAGCGTTGCGCAGAAGAAAAGATGACATGATTGATGTTCAGAAGTATTTGAACTCAAGGAAGATGGTAAAGAAGGCAATCCACAAGGCCTTGAAGGGAATGGAAAAAACAAGTTCCCAAAAAAGTGATGACAGTTCAGAAATTGTTAGCTTGCTAAAGGAGGCAGAAACTGTTACATATAACAGCATTGAATCCTTATTGTTATTTGTAGCAGGACCAAAGTTCCCATCAAAGATGAGCAGATGGTCCTTGGTTTCTAAGTTCATGCAACCCAAGAAAGTGGTGAGCAAAGATGAAGACACAAATGGAAATGAAGTAGAGATGGTGGATGTTGCTTTATGCTCAATCACCAATCACAAATCTGATTTCCTTGTGCAAGTGGAAGATGTGCAAAACTCTCTAAGGAAATTGGAGTCATGCATTTGTGACTTTGAAGAAGATCTCGAAAATCTATATCGTTGTCTTATAAAGAACAGAGTCTCATTTCTTAACATCCTAAATCACTAA 849 38.52 MDSIAANSKKSFHIRSNSLPSKPHPVVDEVNENLCRLRASEEATSSSSLCQKLDGLQDLHNSIDKLLLLPLTHQALVDNKSVDDLLEGSLKTLDVCALAKDVLSQMKESAHELESALRRRKDDMIDVQKYLNSRKMVKKAIHKALKGMEKTSSQKSDDSSEIVSLLKEAETVTYNSIESLLLFVAGPKFPSKMSRWSLVSKFMQPKKVVSKDEDTNGNEVEMVDVALCSITNHKSDFLVQVEDVQNSLRKLESCICDFEEDLENLYRCLIKNRVSFLNILNH* 283
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4408121 4408969 + Chy1G006270.1 Chy01g00627 217808

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy01g00627 282 Pfam Protein BPS1 52 279 IPR004320 GO:0048364|GO:0048367
Chy01g00627 282 Coils Coil 103 123 - -
Chy01g00627 282 PANTHER DUF241 DOMAIN PROTEIN 8 281 - -
Chy01g00627 282 PANTHER BPS1-LIKE PROTEIN 8 281 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy01g00627 - - - csv:116405025 505.368
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g00627 Chy-Chr1:4408121 Chy01g00630 Chy-Chr1:4418666 1.40E-58 proximal
Chy01g00626 Chy-Chr1:4403349 Chy01g00627 Chy-Chr1:4408121 1.63E-154 tandem
Chy01g00627 Chy-Chr1:4408121 Chy01g00628 Chy-Chr1:4414154 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g246 . . . . . . . . Cmo19g00801 . . . . . . . . Bhi05g01615 Tan02g0598 Cmetu01g0626 . . . . Cla02g00369 . . . Clacu02g0368 Cmu02g0365 Cre02g0699 . . . . . Csa07g00163 . Cme01g01172 . . . . . . . . . . . Cma11g01345 Cma19g00786 . . . . . . . . . . . . . . . . . . Lsi11g01265 . Chy01g00627 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000131 0 12 1 2 2 1 0 6 0 11 11 12 8 12 12 15 12 2 0 13 11 10 0 12 9 11 7 11 8 6 217
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy01g00627 Chy_Chr01 FPKM 14.217669 16.614225 11.520263 12.323648 4.505828 4.16792 5.479718 0.456756 0.275576 0.232273