Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy01g00634 ATGTATTGGTTTCTCATTTTCCTCTTTTTGTTTGTCTCCTCGACTACGGCTTCTTTTCCGCCCTGTAATCGTTGTCTTCATCAATCCAAAGCTGCTTATTACTACGAAGATTCCCCTACTTCATATGGAGGTGCTTGTGGTTATGGAAATTTAGCATTGGAAATCTCTCAAGGTTATTTTGCAGCTGCTGTCCCTTCCCTTTATAAGGGAGGAGCAGGTTGTGGTGCTTGCTATCAGGTACGATGCAAGGACACATATCTATGTAATACAGCAGGCACTAAAATAGTTTTGACAGATCAAAATAATGATAATAGAACGGATATTGTTCTTAGTAAGAAAGCTTTCTCTGCCATGGCTTTAAAAGGAAAAGCTCAACAACTCTTGAATACGGGACTCGTCGATATAGAATACAAGAGAATACCTTGTGAATACAAAAATAAAAATCTATTGGTACAAGTGGTTGAATGGAGCCACAAACCATATTATTTGGCGATCAAATTCTTATATCAAGGTGGTCAAACTGACATTCAAGCGGTCAACATAGCTCAGGTGGGTTTACCGAAATGGCGCCCTATGAAAAGAAACTATGGAGGTATTTGGGATATCCATGGTGTGCCAGAAGGAGGATTACAATTGAGAATGGTAGTAACTTCAAGATATGATAATGGAAAATGGATTTGGGCAGGTTCTGTGCTCCCATCTGATTGGAAAAATGGAGAAATTTATGATACAGGAGTTCAAATTAATGATATTGCTTATGAATATTGCCCTCCTTGGCAATGTGGTGATGGAGGAGCATGTGGTTATGGGAACTTGGCATTGCAGTTCTCTAATGGCTTCTTTGCAGCTGCTGTGCCTTCTCTATATAAACAAGGAGCTGGTTGTGGGGCTTGCTATCAAGTAAGGTGCAAAAATAGAAGGCTTTGCAATACAGTCGGAACAAAGGTGGTATTGACAGATCAAAATAATGACAATGTAACAGATCTTGTTCTTAGTCCAAAGGCTTTCTTTACAATGGCTCTCAATGGTAAAGGTTCAGATCTTTTGAATCTTGGAGTAGTGGATGTTGAATATAAGAGAGTGCCATGTGAATATCCAAATAGGAATTTGTTGGTGAGAGTGGAAGAATCAAGTTACAACCCATTCAAATTGGCAATAAAATATTTGTACCAAGGTGGGCAAACAGAGATGGTTGCTGTTGATATAGCTCAGGTTGGGACATCAGATTGGAGCCATATGAAGAGAAGTTATGGAGCTGTTTGGGAAACAGACAATGTACCTGAAGGTGCATTACAGTTGAGGATGGTTGTGACTTCTGGATATGATGGAAAATGGGTTTGGGCAAAGTCTGTACTTCCTGCTAATTGGAGAGCTGGGGGCATTTATGATACTGGAGTTCAAATCAACGACATTGCTAAAGAGAGTTGCCCTCCATGGCAATGCGATGGAGGTGCATGTGGGTATGGAAATTTGGCCTTGGAAATGTCTAAAGGTTATTTTGCAGCTGCTGTTCCTTCTATCTATAGAGAAGGAATGGGTTGTGGTGCTTGCTACCAGATAAGATGCAAGAATGCAACATTATGTAACACAGTTGGGACCAAAGTAGTTTTGACAGATCAAAATTCTGATAACAGAACAGATTTTGTTGTTAGTAGAAAAGCTTTTTCAGCTATGGCTTTAGATGGCAAAGGCCAACAACTTTTGAAAACTGGAATTGTTGATATTGAATACAAAAGGATACCTTGTGAATACAATAAAAATTTATTAATACAAGTAGTAGAATGGAGCCACAAGCCATATTATTTGGCAATTAAATTCCTTTACCAAGGAGGCCAAACAGACATAACCGCAGTCGATCTAGCAGCTCAGGATGGTTCTGGAGGGTGGCAATACATGAAAAGAAACTATGGAGCTATTTGGGAGACAAATAAAGTGCCAGAAGGAGCGATAAAGCTAGTGGTGATTGTAGTTTCAGGTTACAAAAATGGAAGAGGGATAATGATAAATTATGCACTTCCTGCTGATTGGAAAAATGGAGAGATTTATGATACTGGAATTCAAATCAAAGATATTGCTACTGAAGCTTGCAATCCTTGGAGATGTGATGGAGGAGGATGTGGTTATGGCAATGTGGCCTTGCAGTTCTCTAATGGCTTCTTTGCAGCTGCTGTCCCTTCCCTTTATAGACAAGGAGTTGGTTGTGGTGCTTGCGATCAGGTGAGATGCAAAAACAGAAGGCTTTGTAACACCATAGGGACTAAAGTGGTGTTAACGGATCAAAATAATGATAATGTGACAGATCTTGTTCTTAGTAAAAGAGCTTTCTTTACAATGGCTCTAAATGGCAAAGGTGCAGACCTCTTGAATCTTGGAGTTGTTGATGTTGAATACAAGAGGGTGGCTTGTGAATACAAACATAAGAATCTGTTAGTGCAAGTGGAAGAATCAAGCTACAATCCATTTTACTTGGCAATTAAATTCTTGTACCAAGGTGGCCAAACAGACATGGTAGCTGTGGATATAGCTCAAGTAGGTACCTCAGAGTGGAGCCATATGAAGAGAAGTTATGGAGCTGTTTGGGAAATTAACAACATACCTGAAGGCTCATTACAATTGAGAATGGTTGTGACTTCTGTATATGATGGAAAATGGGTTTGGGCAAAGTCTGTACTTCCTGCTGATTGGAAAAGTGGAGCCATTTACGATACTGGAGTTCAGATCAACGACATTGCTAAAGAGAGTTGTCCTCCATGGCAATGTGGTGATAAACCATGGAAATGA 2781 39.81 MYWFLIFLFLFVSSTTASFPPCNRCLHQSKAAYYYEDSPTSYGGACGYGNLALEISQGYFAAAVPSLYKGGAGCGACYQVRCKDTYLCNTAGTKIVLTDQNNDNRTDIVLSKKAFSAMALKGKAQQLLNTGLVDIEYKRIPCEYKNKNLLVQVVEWSHKPYYLAIKFLYQGGQTDIQAVNIAQVGLPKWRPMKRNYGGIWDIHGVPEGGLQLRMVVTSRYDNGKWIWAGSVLPSDWKNGEIYDTGVQINDIAYEYCPPWQCGDGGACGYGNLALQFSNGFFAAAVPSLYKQGAGCGACYQVRCKNRRLCNTVGTKVVLTDQNNDNVTDLVLSPKAFFTMALNGKGSDLLNLGVVDVEYKRVPCEYPNRNLLVRVEESSYNPFKLAIKYLYQGGQTEMVAVDIAQVGTSDWSHMKRSYGAVWETDNVPEGALQLRMVVTSGYDGKWVWAKSVLPANWRAGGIYDTGVQINDIAKESCPPWQCDGGACGYGNLALEMSKGYFAAAVPSIYREGMGCGACYQIRCKNATLCNTVGTKVVLTDQNSDNRTDFVVSRKAFSAMALDGKGQQLLKTGIVDIEYKRIPCEYNKNLLIQVVEWSHKPYYLAIKFLYQGGQTDITAVDLAAQDGSGGWQYMKRNYGAIWETNKVPEGAIKLVVIVVSGYKNGRGIMINYALPADWKNGEIYDTGIQIKDIATEACNPWRCDGGGCGYGNVALQFSNGFFAAAVPSLYRQGVGCGACDQVRCKNRRLCNTIGTKVVLTDQNNDNVTDLVLSKRAFFTMALNGKGADLLNLGVVDVEYKRVACEYKHKNLLVQVEESSYNPFYLAIKFLYQGGQTDMVAVDIAQVGTSEWSHMKRSYGAVWEINNIPEGSLQLRMVVTSVYDGKWVWAKSVLPADWKSGAIYDTGVQINDIAKESCPPWQCGDKPWK* 927
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4458410 4473405 - Chy1G006340.1 Chy01g00634 217815
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy01g00634 926 SMART dpbb_1 282 358 IPR007112 -
Chy01g00634 926 SMART dpbb_1 61 137 IPR007112 -
Chy01g00634 926 SMART dpbb_1 721 797 IPR007112 -
Chy01g00634 926 SMART dpbb_1 501 577 IPR007112 -
Chy01g00634 926 Gene3D - 242 364 IPR036908 -
Chy01g00634 926 Gene3D - 465 582 IPR036908 -
Chy01g00634 926 Gene3D - 15 142 IPR036908 -
Chy01g00634 926 PANTHER EXPANSIN-B3 6 262 - -
Chy01g00634 926 PANTHER EXPANSIN-LIKE A1-RELATED 6 262 - -
Chy01g00634 926 PANTHER EXPANSIN-LIKE A1-RELATED 482 698 - -
Chy01g00634 926 Pfam Expansin C-terminal domain 156 233 IPR007117 -
Chy01g00634 926 Pfam Expansin C-terminal domain 596 659 IPR007117 -
Chy01g00634 926 Pfam Expansin C-terminal domain 811 892 IPR007117 -
Chy01g00634 926 Pfam Expansin C-terminal domain 372 453 IPR007117 -
Chy01g00634 926 PRINTS Expansin/Lol pI family signature 351 367 IPR007118 GO:0005576
Chy01g00634 926 PRINTS Expansin/Lol pI family signature 285 303 IPR007118 GO:0005576
Chy01g00634 926 PRINTS Expansin/Lol pI family signature 263 281 IPR007118 GO:0005576
Chy01g00634 926 PRINTS Expansin/Lol pI family signature 450 464 IPR007118 GO:0005576
Chy01g00634 926 PRINTS Expansin/Lol pI family signature 410 424 IPR007118 GO:0005576
Chy01g00634 926 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 600 684 IPR007117 -
Chy01g00634 926 Gene3D - 681 800 IPR036908 -
Chy01g00634 926 SUPERFAMILY Barwin-like endoglucanases 15 146 IPR036908 -
Chy01g00634 926 SUPERFAMILY Barwin-like endoglucanases 476 586 IPR036908 -
Chy01g00634 926 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 483 587 IPR007112 -
Chy01g00634 926 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 161 244 IPR007117 -
Chy01g00634 926 Gene3D - 365 464 IPR036749 -
Chy01g00634 926 Gene3D - 804 908 IPR036749 -
Chy01g00634 926 SUPERFAMILY Barwin-like endoglucanases 259 367 IPR036908 -
Chy01g00634 926 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 264 368 IPR007112 -
Chy01g00634 926 SUPERFAMILY Barwin-like endoglucanases 696 806 IPR036908 -
Chy01g00634 926 SUPERFAMILY PHL pollen allergen 368 463 IPR036749 -
Chy01g00634 926 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 703 807 IPR007112 -
Chy01g00634 926 SUPERFAMILY PHL pollen allergen 154 243 IPR036749 -
Chy01g00634 926 PANTHER EXPANSIN-LIKE A1-RELATED 702 921 - -
Chy01g00634 926 PANTHER EXPANSIN-B3 482 698 - -
Chy01g00634 926 PANTHER EXPANSIN-B3 702 921 - -
Chy01g00634 926 Pfam Lytic transglycolase 62 137 IPR009009 -
Chy01g00634 926 Pfam Lytic transglycolase 283 358 IPR009009 -
Chy01g00634 926 Pfam Lytic transglycolase 502 577 IPR009009 -
Chy01g00634 926 Gene3D - 583 680 IPR036749 -
Chy01g00634 926 Gene3D - 143 241 IPR036749 -
Chy01g00634 926 PANTHER EXPANSIN-B3 263 481 - -
Chy01g00634 926 SUPERFAMILY PHL pollen allergen 593 683 IPR036749 -
Chy01g00634 926 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 43 147 IPR007112 -
Chy01g00634 926 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 821 903 IPR007117 -
Chy01g00634 926 SUPERFAMILY PHL pollen allergen 807 902 IPR036749 -
Chy01g00634 926 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 382 464 IPR007117 -
Chy01g00634 926 PANTHER EXPANSIN-LIKE A1-RELATED 263 481 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g00634 Chy-Chr1:4458410 Chy01g00636 Chy-Chr1:4482694 1.01E-83 dispersed
Chy02g01565 Chy-Chr2:13807919 Chy01g00634 Chy-Chr1:4458410 1.04E-06 dispersed
Chy01g00633 Chy-Chr1:4451217 Chy01g00634 Chy-Chr1:4458410 4.46E-78 tandem
Chy01g00634 Chy-Chr1:4458410 Chy01g00635 Chy-Chr1:4477152 2.83E-91 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy01g00634 - - csv:101209383 555.444