Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy01g00635 ATGGTGGACAACGACGAGAGGCTGCAACGGATGGCTTCGGCTAACGGCAAGGCTACACCTGAACACCGGAACCAATCACTTTTTCAATATGGAGGAGCATGTGGTTATGGAGACATGGCATTGGAATTTACCAATGGCTACTTTTCAGCTGCTGTCCCCTCTCTCTACAAACAAGGAGCTGGTTGTGGAGCATGTTTTCAGGTAAGATGCAAAGACAAAAGACTATGCAATACAGCAGGGAGCAAAGTGGTATTGACGGATCAAAATTATGATAGCAGAGCAGATTTTGTTCTAAGTAGAAAAGCTTTTTCTGCTATGGCTTTAAAAGGAAAAGGTCAAGAGCTTTTGAATACTGGAATTGTGGATGTAGAATATAAGAGGATACCTTGTGGATACAAAAACAAAAATTTGGCTGTACGAGTTGAAGAATCAAGTTATAATCCCAATTATTTAGCTGTTAAACTTTTGTACCAAGGTGGCCAAACAGAGATTGTGGCTGTCGAGATAGCTGAGATTGGTTCATATGAATGGGTGAGCTTAAGAAGAAACTATGGAGCAGTCTGGGACACAAATAAAGTGCCAAAAGGAGCATTACAAATGAGAATGGCATTTACTTCAGGATACGATGGAAAATGGGTTTGGGCAGAATATGTTCTTCCTGTCGATTGGAAAGTTGGAGCCATATACGATACAGGAGTTCAAATTTACGACATTGCTAAAGAAAGTTGCCCAACATCACAGTGTGGTGATAAACCATGGAAGTGA 765 41.05 MVDNDERLQRMASANGKATPEHRNQSLFQYGGACGYGDMALEFTNGYFSAAVPSLYKQGAGCGACFQVRCKDKRLCNTAGSKVVLTDQNYDSRADFVLSRKAFSAMALKGKGQELLNTGIVDVEYKRIPCGYKNKNLAVRVEESSYNPNYLAVKLLYQGGQTEIVAVEIAEIGSYEWVSLRRNYGAVWDTNKVPKGALQMRMAFTSGYDGKWVWAEYVLPVDWKVGAIYDTGVQIYDIAKESCPTSQCGDKPWK* 255
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4477152 4480673 - Chy1G006350.1 Chy01g00635 217816
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy01g00635 254 Pfam Expansin C-terminal domain 138 220 IPR007117 -
Chy01g00635 254 Pfam Lytic transglycolase 51 125 IPR009009 -
Chy01g00635 254 MobiDBLite consensus disorder prediction 1 20 - -
Chy01g00635 254 PRINTS Expansin/Lol pI family signature 118 134 IPR007118 GO:0005576
Chy01g00635 254 PRINTS Expansin/Lol pI family signature 30 48 IPR007118 GO:0005576
Chy01g00635 254 PRINTS Expansin/Lol pI family signature 217 231 IPR007118 GO:0005576
Chy01g00635 254 PRINTS Expansin/Lol pI family signature 52 70 IPR007118 GO:0005576
Chy01g00635 254 PRINTS Expansin/Lol pI family signature 177 191 IPR007118 GO:0005576
Chy01g00635 254 PANTHER EXPANSIN-LIKE A1-RELATED 22 250 - -
Chy01g00635 254 Gene3D - 3 130 IPR036908 -
Chy01g00635 254 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 31 135 IPR007112 -
Chy01g00635 254 SUPERFAMILY Barwin-like endoglucanases 16 134 IPR036908 -
Chy01g00635 254 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 149 231 IPR007117 -
Chy01g00635 254 SUPERFAMILY PHL pollen allergen 135 230 IPR036749 -
Chy01g00635 254 Gene3D - 132 236 IPR036749 -
Chy01g00635 254 PRINTS Major pollen allergen Lol pI signature 156 171 IPR005795 GO:0005576|GO:0019953
Chy01g00635 254 PRINTS Major pollen allergen Lol pI signature 140 155 IPR005795 GO:0005576|GO:0019953
Chy01g00635 254 PRINTS Major pollen allergen Lol pI signature 107 122 IPR005795 GO:0005576|GO:0019953
Chy01g00635 254 PRINTS Major pollen allergen Lol pI signature 207 224 IPR005795 GO:0005576|GO:0019953
Chy01g00635 254 PANTHER EXPANSIN-B3 22 250 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g00633 Chy-Chr1:4451217 Chy01g00635 Chy-Chr1:4477152 1.12E-107 dispersed
Chy01g00635 Chy-Chr1:4477152 Chy02g01595 Chy-Chr2:14621358 5.37E-93 dispersed
Chy01g00634 Chy-Chr1:4458410 Chy01g00635 Chy-Chr1:4477152 2.83E-91 tandem
Chy01g00635 Chy-Chr1:4477152 Chy01g00636 Chy-Chr1:4482694 2.78E-108 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy01g00635 - - csv:101206821 469.929