Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy01g00637 ATGGCTTTGTTTGTTTGCCTTCTCCTTTTCTTCCTCACCTCATTTGCTAATGCTTGTGATCGTTGTGTTCACCAATCCAAAGCTGCCTATTACTCAAACGATTCACCACTTTCATCTGGCGCTTGTGGTTATGGCTCTTTAGCTCTTGGCTTGTTTAACGGACACCTGGCTGCGGGTGTTCCTTCTCTTTACAAAGAAGGTGTTCGTTGTGGCGCATGCTATCAAATAAGGTGTAAGGACAAGAAGGTTTGCAGCAGAAGAGGGACCAAAGTCATATTGACTGATCAAAATGTACAAAGCAACAGAACTGATTTTGTTTTGAGCAAGAAAGCTTTCGCTGCCATGGCTCAGAAGGGCCATGACAAGACTATCTTGAGACATGGGACTCTGGACATTGAATACAAAAGGATGCCTTGTGAATACAAAAAACAAAATTTGTCAGTAAGAATTGAAGAGTCAAGCAAAAAGCCTCATCACATGGCTCTCAAGTTCTTATTCCAAGGTGGGCAGACAGACATTGTTTTGGTTCATCTTCATCCGGTGAATGGGGGAAGAACGGCGTTCATGAGCAGAAGACATGGGACGGCGGTGTGGGAAATCGACATGATGCCGGAAGAGGCAGTAATGTTTCAAATAAGGGTGATTTCGGGGTTCGACGGGATGTGGATTAGGGCGGAGCGGGTGGTACCGGCAGACTGGAAGCCAGGGATGATCTACGACCTTGGAGTTCAGACAGATGCCATTGCTAAAGGACAAGAGAGTTGTAAACAATGCGATGAAGGGCATTGGTGA 792 45.71 MALFVCLLLFFLTSFANACDRCVHQSKAAYYSNDSPLSSGACGYGSLALGLFNGHLAAGVPSLYKEGVRCGACYQIRCKDKKVCSRRGTKVILTDQNVQSNRTDFVLSKKAFAAMAQKGHDKTILRHGTLDIEYKRMPCEYKKQNLSVRIEESSKKPHHMALKFLFQGGQTDIVLVHLHPVNGGRTAFMSRRHGTAVWEIDMMPEEAVMFQIRVISGFDGMWIRAERVVPADWKPGMIYDLGVQTDAIAKGQESCKQCDEGHW* 264
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4490235 4493608 - Chy1G006370.1 Chy01g00637 217818
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy01g00637 263 Pfam Lytic transglycolase 57 134 IPR009009 -
Chy01g00637 263 Pfam Expansin C-terminal domain 148 230 IPR007117 -
Chy01g00637 263 PANTHER EXPANSIN-B3 5 260 - -
Chy01g00637 263 Gene3D - 13 140 IPR036908 -
Chy01g00637 263 PRINTS Expansin/Lol pI family signature 38 56 IPR007118 GO:0005576
Chy01g00637 263 PRINTS Expansin/Lol pI family signature 60 78 IPR007118 GO:0005576
Chy01g00637 263 PRINTS Expansin/Lol pI family signature 127 143 IPR007118 GO:0005576
Chy01g00637 263 PRINTS Expansin/Lol pI family signature 227 241 IPR007118 GO:0005576
Chy01g00637 263 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 158 241 IPR007117 -
Chy01g00637 263 PANTHER EXPANSIN-LIKE A1-RELATED 5 260 - -
Chy01g00637 263 SUPERFAMILY PHL pollen allergen 145 240 IPR036749 -
Chy01g00637 263 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 39 144 IPR007112 -
Chy01g00637 263 Gene3D - 141 245 IPR036749 -
Chy01g00637 263 SUPERFAMILY Barwin-like endoglucanases 7 142 IPR036908 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g00637 Chy-Chr1:4490235 Chy02g01595 Chy-Chr2:14621358 1.37E-61 dispersed
Chy01g00636 Chy-Chr1:4482694 Chy01g00637 Chy-Chr1:4490235 5.51E-85 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy01g00637 - - csv:101221029 543.888