Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy01g00654 ATGGATACGCTCAAGAAATCTTTCAAAGGCAATGTATCTTTCAAGCATACAAGGAAAATTTCTGCTGGAGGAGCCGGCAGCGAAATCAATCACGAAGAGCTCCCCATTCTTCTCAATCACCAAACTACGGATCATAGTCGTTGTCTAAGGGATCCTCATCCGGTGAACGATTCTGATACGTCTGACAGAACAGAGGTCATTCTCAAGATTGATGGTGGTGGTTCTTCAGCTGTCTCCAGATCTCTGGACTCTGCTGACAATAATGGCGGGAAGGTTTGGCGGGAATCCAGGTACGATTTCTGGAACAATGATGAAATTGGAATTGGGGAGAGTGAGAGAATGGGTGATAATAGTGGTGTTGATAGAAACGAGGGATTTGAATTTGTACAGACTGGTTATGGAATGGAGGATCCTCCTACGAAGCTGATTGGTGACTTTCTTCGTAAGCAGAAAATTGAGGGACAAACGACTTTGGATATGGATTTGGAAATGGAGGAATTGAAGCCAAATAGGATTATAATTCCATTGGCAGAGTCGCCTTTGAGTCAAACTTCTAAGGATCTTAAAGTTTCGTTTCAGCAGGATTCGACAGAAATTTCGAGCAATGATCAGTCAATGAGAAGGCGGAATAGAGATTCTAATGATTTGAAAGAAGAGTCTAAAGGAGGACAATCGCCATGGCAACAACCGCACCATGAACGTCTTGGATCTCCAACTATCGCTGGGGTTCAGAACGAATCTCTTGCTGAGGCTATGAGATGCGCATCTAACTTGTCCTTTCATAGTGAGCTTTCATTTCAAAGGAAATCTAATTTACTGAGGACGAAAACCAAGTCAAGATTGATAGACCCACCTGCCGAGCCTGACCGGCTCTCTGGCCTCATTCCTAAGTCAGGTCAACTACGATCTGGGTTTCTGGGGAAGATTGAAGACGACGACGATGACCCCTTTCTAGAGGATGACCTTCCAGACGATTTTAAAAGGGGAAATTTCAGTGCTCTAACTGTTCTACAATGGGTTAGTTTGATTATAATCACTGCAGCTTTAATCTGCACTCTTTCTGTTCCTTATTTGAGGGAAAAGAGTCTATGGGAGTTGGATATATGGAAATGGGAGGTGATGATTATGATACTGATTTGTGGACGATTGGTATCTGGTTGGGGGATTAGGATTGGTGTATTTTTCATTGAGAGGAATTTTCTTTTGCGTAAAAGGGTTTTGTATTTTGTATATGGGGTTAGAAAACCAGTGCAGAATTGTTTATGGTTAGGCCTTGTTCTCATCGCTTGGCATTTGTTGTTCAATAAACGGGTTGAGAAACAAACCAACACCAGTATACTCAATTATGTGAGCAGAGTTTTAGTTTGTCTCTTGATAAGCACACTGATATGGCTTGTGAAAACCTTGATGGTGAAGGTGCTTGCCTCTTCTTTCCATGTAAGCACATACTTCGATCGAATTCAGGAATCGTTGTTTAATCAATATGTCATTGAGACGCTCTCGGGTCCACCTCTGGTTGAAATACGGAAGAATGAGGAAGAAGAGGAGAGGATTGCAGATGAAGTCCAAAAGTTACAGAATGCAGGAATTACCATACCCCCTGATCTCAAGGCTGCAACCTTTGCTTCTATAAAGAGTGGAAGGGCAATAGGTAGTGGACGGACCCACAAAAGTTTTTGTGCAAAAAGTTGCAAACTCTCTCGAGCACTGACCAAAAATGGGAACGATGGAATAACGATTGACCATTTGCACAAACTAAGTACGAAGAACGTCTCTGCCTGGAATATGAAGAGGTTGTTGAACATAGTTCGATATGGTAGTATTTCCACACTGGATGAACAAATACGGGGGCCGTGTCTTGATGATGAATCTACTACAGAGATCAAAAGTGAACGCGAGGCAAAGGCTGCAGCAAAAAAGATTTTTCAGAATGTGGCTCGTCGTGGATATAAGTACATCTACCTGGATGACTTAGTGCGGTTCATGAGAGAAGACGAGGTTCTTAAAACGATGAGTCTCTTTGAAGGAGCCGCTGAAAACCAGAGGATAAGCAAATCTGCCTTGAAAAATTGGGTGGTCAATGCGTTCAGGGAACGGAGAGCCCTTGCTTTAACACTGAATGATACCAAAACAGCTGTGGATAAACTACATCACATGGTGAATGTCATATTCGGCATCCTTATATTAATTTTATGGCTTATAGTATTAGGAATTGCCTCCAGCAAATTTTTCATCTTCCTTAGTTCTCAAATAGTGGTTGTGGCATTTATTTTTGGAAACACTTGCAAAACCATATTTGAAGCAATCATCTTTTTGTTTGTCATGCATCCATTTGACGTTGGAGATCGCTGCGAAATCGATGGAATGCAGATGGTTGTAGAGGAAATGAACATCTTGACTACTGTATTCTTGAGATACGACAACTTGAAGGTTATAATCCCAAATAGTGTTCTTGCAACCAAATTAATCCACAACTTCTACCGTAGTCCTGACATGGGCGAATCGGTTGAATTCCTTGTCCATATCGCTACACCAGCTGAGAAAATTACGGTCATGAAACAGAGAATTATAAGTTACATTGAAGGCAACAAAGAACATTGGTATCCTGCTCCTATGATTGTGTTCAAGGATATAGATGGTTTAAACAAGGTCAAATTGGCAGTTTGGTTGTCACACAGAATGAACCATCAAGACTCAGGGGAAAGATGGGCTCGGAGGTCCGTCTTGGTCGAAGAAGTTGTTAAAGTCTGTCAAGAGCTCGACATTCAATATCGTCTATTGCCAATTGATATCAATATCCGTTCATTGCCTTCTTCTGCACCCTCCATTGGCTTTCCTTCAAATTGGACTTCCCCTGCAAGTTGA 2865 41.85 MDTLKKSFKGNVSFKHTRKISAGGAGSEINHEELPILLNHQTTDHSRCLRDPHPVNDSDTSDRTEVILKIDGGGSSAVSRSLDSADNNGGKVWRESRYDFWNNDEIGIGESERMGDNSGVDRNEGFEFVQTGYGMEDPPTKLIGDFLRKQKIEGQTTLDMDLEMEELKPNRIIIPLAESPLSQTSKDLKVSFQQDSTEISSNDQSMRRRNRDSNDLKEESKGGQSPWQQPHHERLGSPTIAGVQNESLAEAMRCASNLSFHSELSFQRKSNLLRTKTKSRLIDPPAEPDRLSGLIPKSGQLRSGFLGKIEDDDDDPFLEDDLPDDFKRGNFSALTVLQWVSLIIITAALICTLSVPYLREKSLWELDIWKWEVMIMILICGRLVSGWGIRIGVFFIERNFLLRKRVLYFVYGVRKPVQNCLWLGLVLIAWHLLFNKRVEKQTNTSILNYVSRVLVCLLISTLIWLVKTLMVKVLASSFHVSTYFDRIQESLFNQYVIETLSGPPLVEIRKNEEEEERIADEVQKLQNAGITIPPDLKAATFASIKSGRAIGSGRTHKSFCAKSCKLSRALTKNGNDGITIDHLHKLSTKNVSAWNMKRLLNIVRYGSISTLDEQIRGPCLDDESTTEIKSEREAKAAAKKIFQNVARRGYKYIYLDDLVRFMREDEVLKTMSLFEGAAENQRISKSALKNWVVNAFRERRALALTLNDTKTAVDKLHHMVNVIFGILILILWLIVLGIASSKFFIFLSSQIVVVAFIFGNTCKTIFEAIIFLFVMHPFDVGDRCEIDGMQMVVEEMNILTTVFLRYDNLKVIIPNSVLATKLIHNFYRSPDMGESVEFLVHIATPAEKITVMKQRIISYIEGNKEHWYPAPMIVFKDIDGLNKVKLAVWLSHRMNHQDSGERWARRSVLVEEVVKVCQELDIQYRLLPIDINIRSLPSSAPSIGFPSNWTSPAS* 955
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4659404 4663315 + Chy1G006540.1 Chy01g00654 217835

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy01g00654 954 MobiDBLite consensus disorder prediction 185 201 - -
Chy01g00654 954 Coils Coil 508 528 - -
Chy01g00654 954 SUPERFAMILY Sm-like ribonucleoproteins 767 826 IPR010920 -
Chy01g00654 954 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 116 938 - -
Chy01g00654 954 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 3 106 - -
Chy01g00654 954 PIRSF Memb_At2g17000 51 954 IPR016688 -
Chy01g00654 954 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 116 938 IPR016688 -
Chy01g00654 954 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 3 106 IPR016688 -
Chy01g00654 954 MobiDBLite consensus disorder prediction 202 219 - -
Chy01g00654 954 Pfam Mechanosensitive ion channel 719 923 IPR006685 GO:0016020|GO:0055085
Chy01g00654 954 MobiDBLite consensus disorder prediction 185 237 - -
Chy01g00654 954 Gene3D - 777 826 IPR023408 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy01g00654 K22048 MSL4S; mechanosensitive ion channel protein 4/5/6/7/8/9/10 - csv:101207426 1792.32
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g00654 Chy-Chr1:4659404 Chy11g01095 Chy-Chr11:15977556 0 dispersed
Chy01g00654 Chy-Chr1:4659404 Chy02g01258 Chy-Chr2:9193429 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g216 . Blo15g00394 Bda06g00468 . Bpe07g00704 . . Bma12g00910 . Cmo11g01757 . . . . Sed01g2461 . . Bhi05g01669 Tan02g0642 Cmetu01g0333 . . . . Cla02g00401 Cam02g0406 Cec02g0406 Cco02g0422 Clacu02g0409 Cmu02g0405 Cre02g0740 Cone12ag1250 . Cone3ag0976 Cone10ag1228 Lsi10g00810 . . Cme01g01219 . . . . Bpe15g00798 . . . . . . Cma11g01360 . . . Cpe16g00335 . . . . . . . . . . . . . . . . . Chy01g00654 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy06g00156 . 129 505 Mechanosensitive Ion Channel Family AT4G00290 67.1 5.3e-149 524.6
Chy03g01308 . 10 692 Mechanosensitive Ion Channel Family AT5G10490 57.6 1.1e-197 686.8
Chy06g01600 . 102 761 Mechanosensitive Ion Channel Family AT5G10490 54.4 6.4e-182 634.4
Chy03g01308 . 10 672 Mechanosensitive Ion Channel Family AT1G58200 57.8 2.1e-196 682.6
Chy06g01600 . 82 544 Mechanosensitive Ion Channel Family AT1G58200 64.6 1.8e-168 589.7
Chy11g01095 . 43 921 Mechanosensitive Ion Channel Family AT1G53470 55.7 9.1e-261 896.7
Chy11g01095 . 43 921 Mechanosensitive Ion Channel Family AT3G14810 53.1 5.9e-249 857.4
Chy11g01095 . 43 920 Mechanosensitive Ion Channel Family AT1G78610 59.5 1.3e-280 962.6
Chy01g00654 . 59 954 Mechanosensitive Ion Channel Family AT1G78610 55.5 3.4e-273 937.9
Chy11g01095 . 216 921 Mechanosensitive Ion Channel Family AT2G17000 61.4 5.5e-239 824.3
Chy01g00654 . 268 942 Mechanosensitive Ion Channel Family AT2G17000 58.3 6.1e-222 767.7
Chy02g01258 . 59 751 Mechanosensitive Ion Channel Family AT5G12080 52.2 5.5e-195 677.9
Chy07g00275 . 61 715 Mechanosensitive Ion Channel Family AT5G12080 53.7 1.0e-188 657.1
Chy07g00274 . 73 729 Mechanosensitive Ion Channel Family AT5G12080 52.3 4.9e-175 611.7
Chy07g00276 . 55 702 Mechanosensitive Ion Channel Family AT5G12080 51.2 2.4e-166 582.8
Chy05g00620 . 1 531 Mechanosensitive Ion Channel Family AT5G12080 51.2 3.3e-139 492.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001937 2 3 2 2 2 2 2 2 2 2 2 2 2 2 2 1 2 5 2 2 2 2 2 2 2 3 2 5 3 1 67
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy01g00654 Chy_Chr01 FPKM 2.155043 1.923826 0.295622 0.652516 0.0 0.0 0.0 1.070428 1.190669 1.147474