Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy01g00654 ATGGATACGCTCAAGAAATCTTTCAAAGGCAATGTATCTTTCAAGCATACAAGGAAAATTTCTGCTGGAGGAGCCGGCAGCGAAATCAATCACGAAGAGCTCCCCATTCTTCTCAATCACCAAACTACGGATCATAGTCGTTGTCTAAGGGATCCTCATCCGGTGAACGATTCTGATACGTCTGACAGAACAGAGGTCATTCTCAAGATTGATGGTGGTGGTTCTTCAGCTGTCTCCAGATCTCTGGACTCTGCTGACAATAATGGCGGGAAGGTTTGGCGGGAATCCAGGTACGATTTCTGGAACAATGATGAAATTGGAATTGGGGAGAGTGAGAGAATGGGTGATAATAGTGGTGTTGATAGAAACGAGGGATTTGAATTTGTACAGACTGGTTATGGAATGGAGGATCCTCCTACGAAGCTGATTGGTGACTTTCTTCGTAAGCAGAAAATTGAGGGACAAACGACTTTGGATATGGATTTGGAAATGGAGGAATTGAAGCCAAATAGGATTATAATTCCATTGGCAGAGTCGCCTTTGAGTCAAACTTCTAAGGATCTTAAAGTTTCGTTTCAGCAGGATTCGACAGAAATTTCGAGCAATGATCAGTCAATGAGAAGGCGGAATAGAGATTCTAATGATTTGAAAGAAGAGTCTAAAGGAGGACAATCGCCATGGCAACAACCGCACCATGAACGTCTTGGATCTCCAACTATCGCTGGGGTTCAGAACGAATCTCTTGCTGAGGCTATGAGATGCGCATCTAACTTGTCCTTTCATAGTGAGCTTTCATTTCAAAGGAAATCTAATTTACTGAGGACGAAAACCAAGTCAAGATTGATAGACCCACCTGCCGAGCCTGACCGGCTCTCTGGCCTCATTCCTAAGTCAGGTCAACTACGATCTGGGTTTCTGGGGAAGATTGAAGACGACGACGATGACCCCTTTCTAGAGGATGACCTTCCAGACGATTTTAAAAGGGGAAATTTCAGTGCTCTAACTGTTCTACAATGGGTTAGTTTGATTATAATCACTGCAGCTTTAATCTGCACTCTTTCTGTTCCTTATTTGAGGGAAAAGAGTCTATGGGAGTTGGATATATGGAAATGGGAGGTGATGATTATGATACTGATTTGTGGACGATTGGTATCTGGTTGGGGGATTAGGATTGGTGTATTTTTCATTGAGAGGAATTTTCTTTTGCGTAAAAGGGTTTTGTATTTTGTATATGGGGTTAGAAAACCAGTGCAGAATTGTTTATGGTTAGGCCTTGTTCTCATCGCTTGGCATTTGTTGTTCAATAAACGGGTTGAGAAACAAACCAACACCAGTATACTCAATTATGTGAGCAGAGTTTTAGTTTGTCTCTTGATAAGCACACTGATATGGCTTGTGAAAACCTTGATGGTGAAGGTGCTTGCCTCTTCTTTCCATGTAAGCACATACTTCGATCGAATTCAGGAATCGTTGTTTAATCAATATGTCATTGAGACGCTCTCGGGTCCACCTCTGGTTGAAATACGGAAGAATGAGGAAGAAGAGGAGAGGATTGCAGATGAAGTCCAAAAGTTACAGAATGCAGGAATTACCATACCCCCTGATCTCAAGGCTGCAACCTTTGCTTCTATAAAGAGTGGAAGGGCAATAGGTAGTGGACGGACCCACAAAAGTTTTTGTGCAAAAAGTTGCAAACTCTCTCGAGCACTGACCAAAAATGGGAACGATGGAATAACGATTGACCATTTGCACAAACTAAGTACGAAGAACGTCTCTGCCTGGAATATGAAGAGGTTGTTGAACATAGTTCGATATGGTAGTATTTCCACACTGGATGAACAAATACGGGGGCCGTGTCTTGATGATGAATCTACTACAGAGATCAAAAGTGAACGCGAGGCAAAGGCTGCAGCAAAAAAGATTTTTCAGAATGTGGCTCGTCGTGGATATAAGTACATCTACCTGGATGACTTAGTGCGGTTCATGAGAGAAGACGAGGTTCTTAAAACGATGAGTCTCTTTGAAGGAGCCGCTGAAAACCAGAGGATAAGCAAATCTGCCTTGAAAAATTGGGTGGTCAATGCGTTCAGGGAACGGAGAGCCCTTGCTTTAACACTGAATGATACCAAAACAGCTGTGGATAAACTACATCACATGGTGAATGTCATATTCGGCATCCTTATATTAATTTTATGGCTTATAGTATTAGGAATTGCCTCCAGCAAATTTTTCATCTTCCTTAGTTCTCAAATAGTGGTTGTGGCATTTATTTTTGGAAACACTTGCAAAACCATATTTGAAGCAATCATCTTTTTGTTTGTCATGCATCCATTTGACGTTGGAGATCGCTGCGAAATCGATGGAATGCAGATGGTTGTAGAGGAAATGAACATCTTGACTACTGTATTCTTGAGATACGACAACTTGAAGGTTATAATCCCAAATAGTGTTCTTGCAACCAAATTAATCCACAACTTCTACCGTAGTCCTGACATGGGCGAATCGGTTGAATTCCTTGTCCATATCGCTACACCAGCTGAGAAAATTACGGTCATGAAACAGAGAATTATAAGTTACATTGAAGGCAACAAAGAACATTGGTATCCTGCTCCTATGATTGTGTTCAAGGATATAGATGGTTTAAACAAGGTCAAATTGGCAGTTTGGTTGTCACACAGAATGAACCATCAAGACTCAGGGGAAAGATGGGCTCGGAGGTCCGTCTTGGTCGAAGAAGTTGTTAAAGTCTGTCAAGAGCTCGACATTCAATATCGTCTATTGCCAATTGATATCAATATCCGTTCATTGCCTTCTTCTGCACCCTCCATTGGCTTTCCTTCAAATTGGACTTCCCCTGCAAGTTGA 2865 41.85 MDTLKKSFKGNVSFKHTRKISAGGAGSEINHEELPILLNHQTTDHSRCLRDPHPVNDSDTSDRTEVILKIDGGGSSAVSRSLDSADNNGGKVWRESRYDFWNNDEIGIGESERMGDNSGVDRNEGFEFVQTGYGMEDPPTKLIGDFLRKQKIEGQTTLDMDLEMEELKPNRIIIPLAESPLSQTSKDLKVSFQQDSTEISSNDQSMRRRNRDSNDLKEESKGGQSPWQQPHHERLGSPTIAGVQNESLAEAMRCASNLSFHSELSFQRKSNLLRTKTKSRLIDPPAEPDRLSGLIPKSGQLRSGFLGKIEDDDDDPFLEDDLPDDFKRGNFSALTVLQWVSLIIITAALICTLSVPYLREKSLWELDIWKWEVMIMILICGRLVSGWGIRIGVFFIERNFLLRKRVLYFVYGVRKPVQNCLWLGLVLIAWHLLFNKRVEKQTNTSILNYVSRVLVCLLISTLIWLVKTLMVKVLASSFHVSTYFDRIQESLFNQYVIETLSGPPLVEIRKNEEEEERIADEVQKLQNAGITIPPDLKAATFASIKSGRAIGSGRTHKSFCAKSCKLSRALTKNGNDGITIDHLHKLSTKNVSAWNMKRLLNIVRYGSISTLDEQIRGPCLDDESTTEIKSEREAKAAAKKIFQNVARRGYKYIYLDDLVRFMREDEVLKTMSLFEGAAENQRISKSALKNWVVNAFRERRALALTLNDTKTAVDKLHHMVNVIFGILILILWLIVLGIASSKFFIFLSSQIVVVAFIFGNTCKTIFEAIIFLFVMHPFDVGDRCEIDGMQMVVEEMNILTTVFLRYDNLKVIIPNSVLATKLIHNFYRSPDMGESVEFLVHIATPAEKITVMKQRIISYIEGNKEHWYPAPMIVFKDIDGLNKVKLAVWLSHRMNHQDSGERWARRSVLVEEVVKVCQELDIQYRLLPIDINIRSLPSSAPSIGFPSNWTSPAS* 955
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4659404 4663315 + Chy1G006540.1 Chy01g00654 217835
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy01g00654 954 MobiDBLite consensus disorder prediction 185 201 - -
Chy01g00654 954 Coils Coil 508 528 - -
Chy01g00654 954 SUPERFAMILY Sm-like ribonucleoproteins 767 826 IPR010920 -
Chy01g00654 954 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 116 938 - -
Chy01g00654 954 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 3 106 - -
Chy01g00654 954 PIRSF Memb_At2g17000 51 954 IPR016688 -
Chy01g00654 954 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 116 938 IPR016688 -
Chy01g00654 954 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 3 106 IPR016688 -
Chy01g00654 954 MobiDBLite consensus disorder prediction 202 219 - -
Chy01g00654 954 Pfam Mechanosensitive ion channel 719 923 IPR006685 GO:0016020|GO:0055085
Chy01g00654 954 MobiDBLite consensus disorder prediction 185 237 - -
Chy01g00654 954 Gene3D - 777 826 IPR023408 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g00654 Chy-Chr1:4659404 Chy11g01095 Chy-Chr11:15977556 0 dispersed
Chy01g00654 Chy-Chr1:4659404 Chy02g01258 Chy-Chr2:9193429 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy01g00654 K22048 - csv:101207426 1792.32