Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy01g00656 ATGTCCAATTTGGTGATGGTTCGCTGGAGAATTTGGTCTACAAAGACCTTTCACGCAGCTGCTTTAACAGTCTTCAATGCTCAGTTGCAGATTCATCGTCGTCCAGTTCTATTCAACATTGCTTTTCAGTTCAAACAGACTTGTTTCTCTTCTTCGAAAGCCAACAGTTTTCAGGTTCCGGAATTCTATTCTCTGAACAAGAAAATATCTTATTTGATTCGAACAGGCCGAATAAATGAAGCAAGGGAATTGTTTGATAGCAGTGAGCATTGGAATACGATCACATGGAATAGGATGATCCTTGCGTATGTGAAAAGAAGAGAGATGTTGAAAGCACGCCAGTTGTTCGACGAAATGCCTAACAGAGACATTGTATCGTGGAATTTAATGTTATCAGGTTATATATCTTGTGGTGGAAAGTTCGTTGAGCGGGCACGGAATATGTTCGATGAAATGCCAGAAACTGATTGTGTTTCATGGAACACAATGTTGAGTGGGTATGCTAAGAGTGGGATGATGGATAAAGCAGAAGAGCTTTTTAATGAAATGCCTGAGCGTAATGTTGTCTCATGGAATGCCATGGTTTCTGGTTATTTAATGAATGGTCATGTGGAGAAAGCTATCGAGTTCTTTAAGTTGATGCCGAAACGAGACTCTACTTCTCTTAGGGCATTGGTTTCTGGTCTGATTCAGAATGACAAGTTGGTTGAAGCTGAAAGGATTCTGCTTCAATATGGTGGGAATGTTGGTAAAGGAGATCTTGTTGATGCTTATAATACTTTGATTGCTGGATATGGCCAGAAAGGAATGGCCTATGAAGCCCGGAAACTGTTTGATCGCATCCCTTCGTGTTGTGATCAAGAAGAAGATGACTGTGGCAACTCTAGGAGGAATGTGATTTCATGGAACTCTATGATAATGTGCTATGTGAGAGCTAGTGATATAGTCTCTGCTCGAGAACTATTCGATAAAATGGTTGAGCGAGATACTTTTTCATGGAACACTATGATCAGTGGCTATGTACAGATCTTGGATATGAAAGAGGCCTCAAATCTTTTCAGTAGAATGCCAGAGCCCGATACCCTTTCTTGGAATATGATGATATCTGGGTTTTCTGAGATAGGTAGTTTGAAACTGGCTCATGACTTGTTTAAAAGGATACCAGAGAAAAGCCTTGTCTCATGGAATTCCATGATATCTGGCTATGAGAAAAATGAAGACTATAAAGGAGCAATGAACATCTTTTTGCAGATGCAACTTGAAGGTAAAAAACCAGATAGGCACACTTTATCATCAATTCTAAGTGCTTGTGCTGGGTTGGTAGATCTGGTTTTAGGAACTCAGATTCATCAACTAGTTACAAAAGCTTTTATTGCAGATTTACCCATAAACAACTCTCTTGTTACAATGTACTCAAGATGTGGAGCAATCGTCGAGGCAAGGATGGTTTTTGATGGAATGAATCTTCAGAGAGATGTCATTTCTTGGAATGCGATGATTGGCGGATATGCCTCTCATGGCTTTGCAACAGAGGCTCTTCAACTATTTGATTTGATGAAACAATGTAATGTGCAGCCTTCTTATATCACATTCATTTCTGTTCTGAATGCTTGTGCTCATGCTGGATTGATTGAGGAAGGCAGGAGAGAATTCAACTCCATGGTTAACACGCATGGGATCAAGCCACAAGTCAAGCACTATGCAGCCCTTGTTGACATCTTCGGTCGACATGGGCAACTTGAAGAAGCGATGAGTTTGATTAGTAGCATGCCATGTGAACCGGATAAAGCAGTGTGGGGTGCATTACTGGGTGCTTGTAGAGTGCATAACAATGTTGAGATGGCTCGAGCAGCGGCTGAAGCGTTAATGAAACTCCAACCTGAAAGCTCAGCTCCATATGTGGTGCTACATAATATGTATGCCGATGTGGGACGATGGGATGATGCTGCTGAAATGAGAACAATGATGGAGAAGAACAATGTTCAAAAGGACGCTGGATATAGTCGGGTGGATTCTTATTGCTAA 2025 41.09 MSNLVMVRWRIWSTKTFHAAALTVFNAQLQIHRRPVLFNIAFQFKQTCFSSSKANSFQVPEFYSLNKKISYLIRTGRINEARELFDSSEHWNTITWNRMILAYVKRREMLKARQLFDEMPNRDIVSWNLMLSGYISCGGKFVERARNMFDEMPETDCVSWNTMLSGYAKSGMMDKAEELFNEMPERNVVSWNAMVSGYLMNGHVEKAIEFFKLMPKRDSTSLRALVSGLIQNDKLVEAERILLQYGGNVGKGDLVDAYNTLIAGYGQKGMAYEARKLFDRIPSCCDQEEDDCGNSRRNVISWNSMIMCYVRASDIVSARELFDKMVERDTFSWNTMISGYVQILDMKEASNLFSRMPEPDTLSWNMMISGFSEIGSLKLAHDLFKRIPEKSLVSWNSMISGYEKNEDYKGAMNIFLQMQLEGKKPDRHTLSSILSACAGLVDLVLGTQIHQLVTKAFIADLPINNSLVTMYSRCGAIVEARMVFDGMNLQRDVISWNAMIGGYASHGFATEALQLFDLMKQCNVQPSYITFISVLNACAHAGLIEEGRREFNSMVNTHGIKPQVKHYAALVDIFGRHGQLEEAMSLISSMPCEPDKAVWGALLGACRVHNNVEMARAAAEALMKLQPESSAPYVVLHNMYADVGRWDDAAEMRTMMEKNNVQKDAGYSRVDSYC* 675
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4684178 4686202 + Chy1G006560.1 Chy01g00656 217837

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy01g00656 674 SUPERFAMILY TPR-like 160 342 IPR011990 GO:0005515
Chy01g00656 674 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 156 190 IPR002885 -
Chy01g00656 674 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 391 425 IPR002885 -
Chy01g00656 674 SUPERFAMILY TPR-like 289 647 IPR011990 GO:0005515
Chy01g00656 674 Pfam E motif 609 670 IPR046848 -
Chy01g00656 674 PANTHER OS06G0228900 PROTEIN 62 671 - -
Chy01g00656 674 Gene3D Tetratricopeptide repeat domain 253 342 IPR011990 GO:0005515
Chy01g00656 674 Gene3D Tetratricopeptide repeat domain 344 444 IPR011990 GO:0005515
Chy01g00656 674 Gene3D Tetratricopeptide repeat domain 463 671 IPR011990 GO:0005515
Chy01g00656 674 Gene3D Tetratricopeptide repeat domain 122 252 IPR011990 GO:0005515
Chy01g00656 674 Pfam PPR repeat family 391 438 IPR002885 -
Chy01g00656 674 Pfam PPR repeat family 491 539 IPR002885 -
Chy01g00656 674 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 298 332 IPR002885 -
Chy01g00656 674 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 360 390 IPR002885 -
Chy01g00656 674 Pfam PPR repeat 257 282 IPR002885 -
Chy01g00656 674 Pfam PPR repeat 189 217 IPR002885 -
Chy01g00656 674 Pfam PPR repeat 567 591 IPR002885 -
Chy01g00656 674 Pfam PPR repeat 94 123 IPR002885 -
Chy01g00656 674 Pfam PPR repeat 300 328 IPR002885 -
Chy01g00656 674 Pfam PPR repeat 125 154 IPR002885 -
Chy01g00656 674 Pfam PPR repeat 363 390 IPR002885 -
Chy01g00656 674 Pfam PPR repeat 331 357 IPR002885 -
Chy01g00656 674 Pfam PPR repeat 158 188 IPR002885 -
Chy01g00656 674 Pfam PPR repeat 465 487 IPR002885 -
Chy01g00656 674 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 92 126 IPR002885 -
Chy01g00656 674 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 492 526 IPR002885 -
Chy01g00656 674 PANTHER OS07G0578800 PROTEIN-RELATED 62 671 IPR045215 GO:0003723|GO:0009451
Chy01g00656 674 TIGRFAM PPR: pentatricopeptide repeat domain 189 218 IPR002885 -
Chy01g00656 674 TIGRFAM PPR: pentatricopeptide repeat domain 393 426 IPR002885 -
Chy01g00656 674 TIGRFAM PPR: pentatricopeptide repeat domain 494 527 IPR002885 -
Chy01g00656 674 TIGRFAM PPR: pentatricopeptide repeat domain 331 357 IPR002885 -
Chy01g00656 674 TIGRFAM PPR: pentatricopeptide repeat domain 94 125 IPR002885 -
Chy01g00656 674 TIGRFAM PPR: pentatricopeptide repeat domain 363 391 IPR002885 -
Chy01g00656 674 TIGRFAM PPR: pentatricopeptide repeat domain 158 189 IPR002885 -
Chy01g00656 674 TIGRFAM PPR: pentatricopeptide repeat domain 257 281 IPR002885 -
Chy01g00656 674 TIGRFAM PPR: pentatricopeptide repeat domain 300 329 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy01g00656 - - - csv:101207182 1307.35
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g00656 Chy-Chr1:4684178 Chy02g02319 Chy-Chr2:27202193 4.15E-20 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g213 . . . . . . . . . Cmo11g01756 . . . . . . . Bhi05g01672 . . . Hepe02g0402 . . Cla02g00403 . . . . . . . Cone8ag1304 . . . Csa07g00127 . . . . . . Bpe15g00799 . Bma03g00618 . . . . Cma11g01362 . Car11g01386 . . . . . . . . . . . . . . . . . Lsi11g01222 . Chy01g00656 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014695 0 1 0 1 1 0 1 1 0 1 0 0 1 0 1 1 0 1 0 0 1 1 1 1 0 1 1 1 1 1 19