Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy01g00662 ATGGGTGTGGAACAAAACAATCATGATGCAGAGGAGGGAACGCTGGAGATTGGAATGGAATATAGAACAGTCTCTGGAGTTGCTGGTCCCTTGGTTATTCTGGACAAAGTCAAGGGACCTAAATTTCAGGAGATTGTTAATATTCGTCTAGGAGATGGATCAACCAGGCGTGGTCAAGTCCTGGAGGTGGATGGGGAGAAAGCTGTTGTTCAGGTATTCGAAGGAACATCTGGAATTGATAACAAATATACAACTGTGCAATTTACCGGAGAGGTTTTGAAAACTCCAGTCTCCTTGGACATGCTTGGGCGAATTTTTAATGGTTCTGGAAAGCCCATTGATAATGGTCCTCCTATCTTGCCTGAGGCGTACTTGGATATTTCTGGGAGTTCTATAAACCCTAGTGAGAGAACATATCCTGAAGAAATGATACAGACTGGAATCTCTACAATTGATGTCATGAATTCCATTGCTAGAGGGCAAAAGATCCCACTTTTCTCAGCTGCAGGTCTTCCTCACAATGAAATTGCTGCACAAATATGTCGTCAGGCTGGCTTAGTTAAGCGGTTGGAGAAATCCAACGATCTTCTTGAGGGTGGTGAAGAGGACAACTTTGCCATTGTTTTTGCTGCTATGGGTGTTAACATGGAGACTGCTCAATTTTTCAAACGTGATTTTGAAGAAAATGGTTCAATGGAGAGAGTGACCCTATTTCTGAACCTGGCTAATGATCCTACAATTGAGCGTATCATCACCCCTCGTATTGCTCTTACTACTGCTGAATATTTGGCTTATGAATGTGGGAAGCATGTTCTTGTCATACTGACGGATATGAGTTCTTATGCTGATGCCCTTCGTGAGGTGTCTGCTGCACGAGAGGAAGTGCCTGGAAGGCGTGGATACCCTGGTTATATGTATACTGATCTTGCTACAATCTATGAACGAGCTGGACGTATTGAAGGACGTAAAGGATCCATCACTCAAATCCCAATCCTCACCATGCCTAACGATGATATTACACATCCTACTCCCGATCTTACTGGCTATATCACTGAGGGACAGATCTACATCGACAGGCAGCTCTATAACAGACAGATATACCCACCAATTAATGTCCTCCCTTCATTGTCTCGTCTCATGAAGAGTGCCATTGGTGAGGGAATGACCCGTAGGGATCATGCTGATGTATCCAACCAGCTCTATGCAAATTATGCAATTGGGAAGGATGTTCAGGCCATGAAAGCCGTGGTTGGAGAAGAAGCACTCTCTTCTGAGGATCTGCTCTATTTGGAGTTTTTGGACAAATTTGAGAGGAAGTTTGTCACTCAAGGAGCTTACGATACTCGAAACATTTTCCAATCACTTGACCTGGCATGGACACTACTTCGTATTTTCCCTCGTGAACTTCTGCATCGTATACCTGCAAAGACTCTTGATCTGTTCTACAGCCGAGAATCTGCAAATTGA 1467 43.83 MGVEQNNHDAEEGTLEIGMEYRTVSGVAGPLVILDKVKGPKFQEIVNIRLGDGSTRRGQVLEVDGEKAVVQVFEGTSGIDNKYTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKSNDLLEGGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLATIYERAGRIEGRKGSITQIPILTMPNDDITHPTPDLTGYITEGQIYIDRQLYNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHADVSNQLYANYAIGKDVQAMKAVVGEEALSSEDLLYLEFLDKFERKFVTQGAYDTRNIFQSLDLAWTLLRIFPRELLHRIPAKTLDLFYSRESAN* 489
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4756116 4761736 - Chy1G006620.1 Chy01g00662 217843
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy01g00662 488 CDD V_A-ATPase_B 92 379 - -
Chy01g00662 488 CDD ATP-synt_V_A-type_beta_N 20 91 - -
Chy01g00662 488 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 94 383 IPR027417 -
Chy01g00662 488 Gene3D - 29 488 - -
Chy01g00662 488 ProSitePatterns ATP synthase alpha and beta subunits signature. 368 377 IPR020003 GO:0005524
Chy01g00662 488 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 147 377 IPR000194 GO:0005524
Chy01g00662 488 Pfam ATP synthase alpha/beta family, beta-barrel domain 24 90 IPR004100 GO:0046034|GO:1902600
Chy01g00662 488 PANTHER V-TYPE PROTON ATPASE SUBUNIT B 2 488 IPR022879 -
Chy01g00662 488 CDD ATP-synt_V_A-type_beta_C 387 481 - -
Chy01g00662 488 Hamap V-type ATP synthase beta chain [atpB]. 18 486 IPR022879 -
Chy01g00662 488 TIGRFAM V-ATPase_V1_B: V-type ATPase, B subunit 20 487 IPR005723 GO:0033180|GO:0046961|GO:1902600
Chy01g00662 488 PIRSF V-ATPsynth_beta/V-ATPase_B 11 488 IPR022879 -
Chy01g00662 488 PANTHER V-TYPE PROTON ATPASE SUBUNIT B1-RELATED 2 488 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g00662 Chy-Chr1:4756116 Chy09g00876 Chy-Chr9:11509138 7.32E-22 dispersed
Chy01g00662 Chy-Chr1:4756116 Chy10g01193 Chy-Chr10:16688849 5.36E-28 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy01g00662 K02147 - csv:101211838 964.526