Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy01g00667 ATGGATTTTGACGAGTATGATTATTTGGAGAAAACAGTTGAAAATCCCGACGGACAAAAAGTGAAGGAAACTGCCAATGGCGGTGATGGAGAAATGAAATCTGGAGATAAGCATCGTAGTCGAAGTTCAAAATATAAGACTGATGGTAAAGATGATGGGGAACATAGGTCAAAGCGTTTGAAATCGGATGATGAGTCACGTGATCGAGATCGGCATAGAGATAGGACTTCTTTCCGGCATCCGTCTAGGTCCAGAGAGAGAGACCGTGATAGGCATCGAAGCAGTAAGGAAAATAAGGGAAAAGAGGACAGAGAAGGGAATCGGGAAGAGAGAAGCAGTAAGGACAGGGATGTGGACAGAGATAAAGAACGTTCTCATGATCGTGATAGACGGGGTAGAGATGGTGAAAAGAATAGGGAAAGAGAACGGTCACGTCGAAGTAGAAGTCGTTCAGAAAGACATCGCAGTGATCGGGACGATGGCATAAGAGAGAGGAGCCGAGACAATGAACTCAGGGAAAGAGAAAAGGAGAGAGAGTCTAGAGAGCGAGGCAGAGATGGCAGAAGATATAAAGATAAAAAGGACGAAACAGCTGAACCTGAAGCTGATCCTGAAAGGGATCAGAGGACTGTATTTGCCTATCAGATAAGTTTAAAGGCAACTGAACGAGATGTGTACGAGTTCTTCTCCAGGGCTGGTAAGGTGCGAGATGTACGCCTCATAATGGATCGTAATTCACGACGTTCTAAAGGCGTTGGGTATGTTGAATTTGTGGATGCAATGTCTGTGCCCATGGCTATAGCACTTTCCGGCCAGCTCCTGCTTAGTCAGCCTGTGATGGTAAAGCCATCTGAAGCTGAGAAAAACCAGGTTCAATCAACTTCTGCTGCTGGTGGACCGGGTGGAGCAATGGGCCCCTACTCTGGTGGTGCCAGAAGGTTATATGTTGGCAATCTGCACCCCAACATAACTGAAGATAACCTTCGTCAGGTTTTTGGAGCTTTTGGCACTGTGGAACTGGTCCAGATGCCCCTTGATGAATCTGGCCATTGCAAGGGTTTTGGTTTTATTCAGTTCACACGTCTTGAAGATGCTAGAAATGCACTGAGTTTGAATGGACAACTTGAGATTGCTGGTCGAACGATAAAGGTGTCTACAGTCACAGATCAGCCTGGTTTGCAAGATGTTGGAGCAAGTACAGGAGACCTTGATGAGGAAGACGGCGGTGGCTTGTCTTTAAACGCTAGTTCTCGAGCATCCCTGATGCAGAAGTTGGACCGTACTGGTGCCGCATCTAGCATTGCTGGTTCTTTAGGTACACATGTTGTAAATAACCCAGGTCCTACTATGCCGGCACCGATCCTTGGAGGTGCAACTATCCCATCCCTTGGTGTTGGTACTTCTTTGGCCGCCTTTCCTGCTTTTCCTGGACTTGGTGCAGGCGTTCAGGTTCCCCCCGTCACTGCCAATTTACTTGGTGTTGGTACTCCAAGTGAATGTCTACTGTTGAAGAACATGTTTGATCCTACAGCTGAGTCGGAACCAACTTTCGATCTGGATATCCGAGATGACGTTGAAGAGGAATGCTCTAGGTTCGGAAAATTGAAACATATATATGTTGACAAGAATAGTGCCGGTTTTGTATATTTGAGGTTTGAAAAATCGGAGTCTGCAATGGAAGCCCAACGTGCCCTTAATGGAAGATGGTTTGCTGGGAAAATGATTGGTGCAACTTTCATGGACATTCCAAGCTATGAAGCGAAATTTCCAGACAGCAGATAA 1782 46.18 MDFDEYDYLEKTVENPDGQKVKETANGGDGEMKSGDKHRSRSSKYKTDGKDDGEHRSKRLKSDDESRDRDRHRDRTSFRHPSRSRERDRDRHRSSKENKGKEDREGNREERSSKDRDVDRDKERSHDRDRRGRDGEKNRERERSRRSRSRSERHRSDRDDGIRERSRDNELREREKERESRERGRDGRRYKDKKDETAEPEADPERDQRTVFAYQISLKATERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFVDAMSVPMAIALSGQLLLSQPVMVKPSEAEKNQVQSTSAAGGPGGAMGPYSGGARRLYVGNLHPNITEDNLRQVFGAFGTVELVQMPLDESGHCKGFGFIQFTRLEDARNALSLNGQLEIAGRTIKVSTVTDQPGLQDVGASTGDLDEEDGGGLSLNASSRASLMQKLDRTGAASSIAGSLGTHVVNNPGPTMPAPILGGATIPSLGVGTSLAAFPAFPGLGAGVQVPPVTANLLGVGTPSECLLLKNMFDPTAESEPTFDLDIRDDVEEECSRFGKLKHIYVDKNSAGFVYLRFEKSESAMEAQRALNGRWFAGKMIGATFMDIPSYEAKFPDSR* 594
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4814422 4826061 + Chy1G006670.1 Chy01g00667 217848

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy01g00667 593 CDD RRM1_RBM39_like 210 282 - -
Chy01g00667 593 SUPERFAMILY RNA-binding domain, RBD 202 310 IPR035979 GO:0003676
Chy01g00667 593 SMART rrm2_1 313 385 IPR003954 GO:0003676
Chy01g00667 593 SMART rrm2_1 500 578 IPR003954 GO:0003676
Chy01g00667 593 MobiDBLite consensus disorder prediction 1 208 - -
Chy01g00667 593 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 1 589 - -
Chy01g00667 593 SUPERFAMILY RNA-binding domain, RBD 312 579 IPR035979 GO:0003676
Chy01g00667 593 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 312 389 IPR000504 GO:0003723
Chy01g00667 593 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 209 286 IPR000504 GO:0003723
Chy01g00667 593 Gene3D - 149 296 IPR012677 -
Chy01g00667 593 Gene3D - 307 416 IPR012677 -
Chy01g00667 593 Gene3D - 495 593 IPR012677 -
Chy01g00667 593 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 499 582 IPR000504 GO:0003723
Chy01g00667 593 TIGRFAM SF-CC1: splicing factor, CC1-like family 83 591 IPR006509 GO:0003723|GO:0005634|GO:0006397
Chy01g00667 593 CDD RRM3_RBM39_like 498 581 - -
Chy01g00667 593 PANTHER CC1-LIKE SPLICING FACTOR 1 589 - -
Chy01g00667 593 Pfam linker between RRM2 and RRM3 domains in RBM39 protein 403 517 IPR029123 -
Chy01g00667 593 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 523 574 IPR000504 GO:0003723
Chy01g00667 593 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 314 383 IPR000504 GO:0003723
Chy01g00667 593 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 219 277 IPR000504 GO:0003723
Chy01g00667 593 SMART rrm1_1 210 282 IPR000504 GO:0003723
Chy01g00667 593 SMART rrm1_1 500 578 IPR000504 GO:0003723
Chy01g00667 593 SMART rrm1_1 313 385 IPR000504 GO:0003723
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy01g00667 K13091 RBM23_39; RNA-binding protein 23/39 - csv:101209872 1008.05
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g00667 Chy-Chr1:4814422 Chy02g01015 Chy-Chr2:6848660 3.76E-177 dispersed
Chy02g00095 Chy-Chr2:609429 Chy01g00667 Chy-Chr1:4814422 2.29E-08 dispersed
Chy04g01204 Chy-Chr4:18464707 Chy01g00667 Chy-Chr1:4814422 2.51E-07 dispersed
Chy07g01020 Chy-Chr7:15010096 Chy01g00667 Chy-Chr1:4814422 8.69E-06 dispersed
Chy07g01357 Chy-Chr7:18153641 Chy01g00667 Chy-Chr1:4814422 4.92E-11 dispersed
Chy08g00398 Chy-Chr8:9512900 Chy01g00667 Chy-Chr1:4814422 3.96E-06 dispersed
Chy11g00527 Chy-Chr11:5781997 Chy01g00667 Chy-Chr1:4814422 7.38E-06 dispersed
Chy01g00667 Chy-Chr1:4814422 Chy07g00112 Chy-Chr7:986775 6.59E-06 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g183 . . . Bda08g00985 . . Bma05g00377 . . . . . . . Sed05g2245 . . Bhi05g01691 Tan02g0661 Cmetu01g1207 . Hepe02g0413 . . Cla02g00412 Cam02g0421 Cec02g0420 Cco02g0438 Clacu02g0423 Cmu02g0418 Cre02g0752 Cone12ag1242 Cone8ag1298 . . . Csa07g00115 . Cme01g01244 . . . . . . . . . . . . . . Car19g00582 . . . . . . . . . . . . . . . . . . Chy01g00667 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002135 1 5 1 2 2 2 3 2 2 2 2 2 2 2 2 3 2 4 3 2 2 2 2 1 2 1 2 3 2 2 65
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy01g00667 Chy_Chr01 FPKM 0.0 0.0 0.0 0.267827 0.215855 0.0 0.125918 0.404445 0.255257 0.285758