Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy01g00675 ATGTCGAAAGAAGTCACGGAAGAGGGACAGTCCGGCCTCAGAAAGGACTACGTCGACCCACCCCCGGCTCCACTCATCGACGTCGCCGAACTCACCCTTTGGTCCTTCTACAGAGCCCTTATCGCTGAGTTCATTGCCACTCTCCTCTTTCTCTACGTCACAATCGCCACCGTCATCGGCAACAACAAACAAACCAAAATGTGTGATGGCGTCGGAATCCTCGGTATCGCATGGGCCTTCGGTGGCATGATCTTTGTACTCGTCTACTGCACCGCCGGAATCTCCGGTGGTCATATTAATCCCGCGGTGACATTCGGGTTGTTCCTGGCGAGGAAAGTGTCGTTGATCAGAGCGTTTGGGTACATGGTGGCGCAGTGCGCCGGAGCCATCGTTGGCGTTGGATTAGTTAAGGCTTTCATGAAGCATGATTATAACAATAACGGCGGCGGAGCCAACGCCGTTAATTCTGGTTACAGTAGAGGAACGGCTCTTGGTGCTGAGATTATTGGAACTTTCGTTCTTGTTTACACTGTCTTCTCAGCTACTGATCCCAAGAGGAGCGCGCGTGATTCTCACATTCCTGTTTTAGCTCCGTTGCCAATTGGCTTCGCGGTGTTCATGGTTCATCTAGCAACCATTCCCATCACAGGAACCGGAATCAACCCGGCCAGAAGCTTCGGCGCCGCCGTTATCTACAACCGTGAAAAACCCTGGAATGACCACTGGATCTTCTGGGTGGGTCCGTTCGTCGGAGCATTAGCGGCGGCAGCGTACCACCAATACATTCTCCGGGCAGCCGCCATTAAAGCTTTGGGATCATTCCGCAGCAACCCCACAAACTGA 843 53.14 MSKEVTEEGQSGLRKDYVDPPPAPLIDVAELTLWSFYRALIAEFIATLLFLYVTIATVIGNNKQTKMCDGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAFGYMVAQCAGAIVGVGLVKAFMKHDYNNNGGGANAVNSGYSRGTALGAEIIGTFVLVYTVFSATDPKRSARDSHIPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNREKPWNDHWIFWVGPFVGALAAAAYHQYILRAAAIKALGSFRSNPTN* 281
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4879412 4880603 - Chy1G006750.1 Chy01g00675 217856
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy01g00675 280 Gene3D Glycerol uptake facilitator protein. 23 280 IPR023271 -
Chy01g00675 280 CDD MIP 38 262 IPR000425 GO:0015267|GO:0016020|GO:0055085
Chy01g00675 280 Pfam Major intrinsic protein 31 258 IPR000425 GO:0015267|GO:0016020|GO:0055085
Chy01g00675 280 TIGRFAM MIP: MIP family channel proteins 42 258 IPR000425 GO:0015267|GO:0016020|GO:0055085
Chy01g00675 280 PRINTS Major intrinsic protein family signature 38 57 IPR000425 GO:0015267|GO:0016020|GO:0055085
Chy01g00675 280 PRINTS Major intrinsic protein family signature 80 104 IPR000425 GO:0015267|GO:0016020|GO:0055085
Chy01g00675 280 PRINTS Major intrinsic protein family signature 117 136 IPR000425 GO:0015267|GO:0016020|GO:0055085
Chy01g00675 280 PRINTS Major intrinsic protein family signature 166 184 IPR000425 GO:0015267|GO:0016020|GO:0055085
Chy01g00675 280 PRINTS Major intrinsic protein family signature 202 224 IPR000425 GO:0015267|GO:0016020|GO:0055085
Chy01g00675 280 PRINTS Major intrinsic protein family signature 242 262 IPR000425 GO:0015267|GO:0016020|GO:0055085
Chy01g00675 280 PANTHER AQUAPORIN PIP-TYPE-RELATED 1 280 - -
Chy01g00675 280 ProSitePatterns MIP family signature. 98 106 IPR022357 -
Chy01g00675 280 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 1 280 IPR034294 -
Chy01g00675 280 SUPERFAMILY Aquaporin-like 30 264 IPR023271 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g00675 Chy-Chr1:4879412 Chy08g00833 Chy-Chr8:15840346 7.88E-156 dispersed
Chy01g00675 Chy-Chr1:4879412 Chy10g01323 Chy-Chr10:17592391 7.86E-156 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy01g00675 K09872 - csv:101209627 556.214