Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy01g00676 ATGTCGTCGTCTAAGAAGATCGTCCTCAGGAGTTCCGACGGCGAAACCTTTGACGTCGACGAAATCGTTGCCGTCGAGTCTCAGACCATCAAGCACATGATCGAAGACGATTGCGCTGACACTGTTATTCCCTTGCCTAATGTCACCAGTGCCATTCTTTCTAAGGTAATTGAGTATTGTAAGATGCATGTTGAGACCGATGATAAAGATTCTAAGGTCATTGATGATACTCTCAAAACCTGGGATGCTGAATTTGTCAAGGTTGATCAAAATACTCTCTTCGATCTCATCTTGGCTGCTAACTATCTGAATATCAAGAGTCTACTGGATCTAACATGCCAGACAGTGGCAGACATAATCAAAGGAAAGACACCAGAGGAAATTAGAAAGACATTCAACATCAAGAATGATTTTACTCCAGAGGAGGAAGAGGAGGTTCGAAGGGAGAATCAATGGGCCTTCGAGGTTTCTGAAGGTACCTCCCATGACGAGTTATGGGCTGCTGCTTCTCTCCGCGTCCGCACTTTCAATCAATTGCCCCCCGATTCCTTTGGCATCCATGATCATAAGAAGTACTTGGCTGAGCACGAATTTGAAGCAATGAAAGAACGTATTGCGGGGAAAAGGGTTGGGTTTAAAAGAGTATCTTGCATAAATGCTACTCTTCCATTATCAGAAATGTCCTTAGCTGAAGATTTATGTTCAACATGTAAGTTTTCTGATAATGGAGAAGATAGAGTTGTTGTTGGGTCACTTGACATTAATCAATGTGTAAGGCTTCCAGACGAAATAACAGGAATGAAACCTGAGGGAATTGGGGCTGATTTTGCAAGGGCATACCTGAGTAATGTATGTGTTGCTAAGGAACTGCAAAGGAATGGGTTGGGTTATGCTCTTATTGCCAAGGCAAAAACAATTGCACTAGATTGGGGGATAAGCGATCTATACGTGCATGTAGCTTTCAACAACGAAGGTGGAAAGAAGCTTTACATGAAGAGTGGTTTTGTTTATGAAAGTGATGAACCAAGTTGGCAAGCCAGGTTTCTCGATCGTCCTCGCAGGATTCTCTTTTGGACTCCTCTCTCTCAATTTCCCCTATGA 1101 42.96 MSSSKKIVLRSSDGETFDVDEIVAVESQTIKHMIEDDCADTVIPLPNVTSAILSKVIEYCKMHVETDDKDSKVIDDTLKTWDAEFVKVDQNTLFDLILAANYLNIKSLLDLTCQTVADIIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFEVSEGTSHDELWAAASLRVRTFNQLPPDSFGIHDHKKYLAEHEFEAMKERIAGKRVGFKRVSCINATLPLSEMSLAEDLCSTCKFSDNGEDRVVVGSLDINQCVRLPDEITGMKPEGIGADFARAYLSNVCVAKELQRNGLGYALIAKAKTIALDWGISDLYVHVAFNNEGGKKLYMKSGFVYESDEPSWQARFLDRPRRILFWTPLSQFPL* 367
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4887697 4900835 - Chy1G006760.1 Chy01g00676 217857

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy01g00676 366 SUPERFAMILY POZ domain 6 67 IPR011333 -
Chy01g00676 366 PANTHER OS08G0260000 PROTEIN 137 363 - -
Chy01g00676 366 CDD NAT_SF 278 318 - -
Chy01g00676 366 Gene3D Potassium Channel Kv1.1; Chain A 1 156 IPR011333 -
Chy01g00676 366 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 278 354 IPR000182 GO:0016407
Chy01g00676 366 SMART skp1_3 4 105 IPR001232 GO:0006511
Chy01g00676 366 Gene3D - 225 340 - -
Chy01g00676 366 SUPERFAMILY Skp1 dimerisation domain-like 78 153 IPR036296 GO:0006511
Chy01g00676 366 Pfam Skp1 family, tetramerisation domain 5 64 IPR016073 GO:0006511
Chy01g00676 366 Pfam Acetyltransferase (GNAT) family 274 335 IPR000182 GO:0016407
Chy01g00676 366 CDD BTB_POZ_SKP1 6 120 - -
Chy01g00676 366 Pfam Skp1 family, dimerisation domain 106 153 IPR016072 GO:0006511
Chy01g00676 366 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 273 346 IPR016181 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy01g00676 - - - csv:101206225 429.483
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g00676 Chy-Chr1:4887697 Chy03g01039 Chy-Chr3:13898036 1.42E-79 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g170 . . . . . . . . . Cmo11g01745 . . . . . Cpe04g00597 . . . . . . . . Cla02g00422 Cam02g0431 Cec02g0429 Cco02g0447 Clacu02g0432 Cmu02g0427 Cre02g0761 . . . . . . . Cme01g01256 Blo04g00571 . . Bda14g00619 Bpe15g00809 . Bma03g00612 . . . . . . . . . . . . . . . . . . . . . . . . Lsi11g01205 . Chy01g00676 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011808 1 1 1 3 1 1 0 1 1 1 1 1 1 1 1 0 1 2 1 1 1 1 1 1 1 1 0 1 1 1 30
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17284 PF00583 Acetyltransf_1 1.40E-08 CL0257 Chy TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy01g00676 Chy_Chr01 FPKM 15.096977 14.398598 8.966022 9.000753 33.711613 31.672998 32.855854 6.276611 6.77314 5.111716