Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy01g00691 ATGGAAAATGGGGTTGAGGTTGTTGATGGATTGCACGATGGAGAAAAGAAGTTTGTGGGAGATGGTGTTTCACGAGATAGGGTAGATGAAACAGTTGTGGTTGGTTCTCATGAATCTAAGGATACGGAAGGGGAAGATGTTTTTGAGGAGGCATTAGATGGGAAAGATCATTTAATAGAGCAGAGCCCGAAATATGGTTCGGTGAATGGCAATATTGCAGAAGAAGAAGAAATCAATGGTTTTACGTCTGGAGTGACTTCTAACCATCCTAACAGTGCTCACGATGAAGAGAAGTTTGAAGAGGCAATAGAGGCAAGTAGGGTAAATGAGAACCCGGTGGTGGAGGAGCAAGATGTGAATTCTGATAAGGAGACAGAAGGCTTGGATGGGAAATTGGTCGACAATGCAGTTGTGGCTTCTATTATTGATGAGAGAGGAACTGAAGAGGAAGCAGTGACTTCCGAGTTGAACGAGAGGAAGGATGATGAGTTGGATTTCAGTAGAAATGATTCAAGAATTAAGACATTAGAGAACGGTGCTAGCCCAGAGGTTGTAGTGCTGAAGGACGGGGATGAGGATGATTTGAAATATGGTTCGAAGAGTACGAAGTCTGAAAATAATGATAGTAACAATTTGAATGTGACTTCGTCTTCAGATGATGAATTAGTGAATAAGAGTGCTGATTTGGTAGGGGATACTAACCTGGATTCTACCAGTGAGTTTCTTACTGAAAATCGAGATCATGTGGAACTGAATGGGAAGAGCTTAGGTACAGAATTCTCAAACCACGTTGAGGAGACCGAGGAGCCATTAAATGTACCTGTTGTAGATTTGGACAATCTGGATATTACAAATGCTGAGCGAAGGGATGATTCTCTTCACGTGGATCTAGAACTGCCAAACAATGACAGTGAAGACATAAAAGAGGCTACAACTAGTATTGAGCCTAAGAAGGATGATAATAAAAATGAAGAAAGCTCTTCAGCCTGCATGACTACCACAAATCAGGATCACAGGACTGAGGAAGTGACTACCACAAATCAGGATCACAGGAATGAGGAAGTGACTACTGCAGATGAGAATCACCGGATGGAGGAAGTGAAAAATGATTCTATTGGGAAAGATTCAGAAAAGCAGTCCAGAGAATCCCGTGAATTGAACGGTACTACTTCTGATGACCAACATGAACCTATGGGTGAAAATGAAATTTCTCTAGAGACAGTTAAGGATATCTCAGCTTCTGAAAAGATAGCAGATGAGAAAATTGAAAAGATCCAAGACAGTGAAAGTGATGTGAAGGTGAGGGAAGACAACACGTCTAGACATCAGCATCCTGTTGATAGTTCCAATAATGGCCCCGACATTTTAGGGGTTGAAAAGACAGAGAGCAAAGATAAGGTTGGACAGGACAAAACTCAAGTGAACAGGGATACAGAGATTCAACCTGCATCAATCATTGCTTCATCATCTGGAAAATCTACAAATCCCACTCCTCCTGCCCGTCCAGCTGGTCTTGGGCGTGCTGCTCCATTATTGGAACCTGCCCCTCGGGTGGTGCAGCCGCCTCGAGTTAATGGTACTGTATCCCATGTTCAAATGCAACAAATTGATGATCCTGTTAATGGGGATGCTGAGGAAAATGATGATACTCGTGAGCAACTCCAGATGATAAGAGTGAAATTTTTGCGTCTTGCACATAGGCTTGGGCAAACTCCACACAATGTTGTTGTGGCACAAGTGCTATACCGTCTTGGATTAGCTGAGCAACTTCGAGGAAGAAATGGAGGTCGGGTTGGTGCTTTCAGCTTTGACCGTGCCAGTGCCATGGCCGAGCAGCTGGAGGCAGCTGGGCAAGAGCCACTTGATTTCTCTTGTACAATCATGGTTCTTGGAAAGACAGGTGTGGGGAAAAGTGCTACCATCAACTCCATATTTGATGAAGTTAAATTCAGTACTGATGCTTTTCAAATGGGCACAAAAAAGGTTCAAGATGTTGTTGGAACTGTGCAGGGGATCAAAGTACGGGTAATTGACACTCCTGGCCTTCTTTCCTCTTGGTCTGACCAGCGCCAAAATGAGAAGATCCTTCTCTCTGTTAAGCGTTTTATAAAAAAGACGCCTCCAGATATTGTTCTGTATCTTGATAGGTTGGACATGCAAACCCGGGATTTCAGTGATATGCCACTCTTGCGTACAATTACTGAAATATTTGGACCATCAATATGGTTCAATGCGATTGTGGTTCTTACTCATGCAGCATCTGCTCCACCTGATGGTCCAAATGGTACTGCTTCTAGTTATGATATGTTTGTCACTCAGCGGTCTCATGTTGTACAGCAAGCTATACGCCAGGCTGCAGGGGATATGCGCCTTATGAATCCTGTCTCATTAGTGGAGAATCACTCTGCTTGCAGAACGAATCGAGCTGGGCAACGGGTATTGCCGAATGGACAGGTTTGGAAACCTCATTTATTATTGCTCTCATTTGCCTCAAAAATTTTGGCCGAAGCTAACACTCTTCTGAAGTTGCAAGATAGTCCTCCTGGGAGGCCATTTACTCCTAGGTCGAAGTCACCACCTTTACCGTTCCTTCTCTCTTCCCTGCTTCAGTCCAGACCTCAAGTTAAACTGCCGGAGGAACAGTTTGGTGATGATGATGGTCTTGAGGATGACCTTGATGAATCATCAGATTCTGAAAATGAATCTGAATATGATGAATTGCCACCTTTTAAACGACTGACAAAAGTACAGGTGGCAAAGCTCTCCAAAGCACAGAAGAAGGCCTACTTTGACGAATTGGAATACAGGGAAAAGCTTTTTATGAAGAAGCAACTGAAAGAAGAGAAAAGGAGAAGGAAGATGATGAAGAAAATGGCAGCTGAGGCAAAAGATCAACACAGCGATGGGAGTGAGAATGTAGAAGAAGATCCTGGTGCTGCTGCTTCAGTACCGGTTCCCATGCCTGATTTGGCATTACCTGCTTCCTTTGATTCTGATAACCCCACTCACCGGTATCGTTATCTCGATTCCTCTAACCAGTGGCTAATCAGGCCTGTACTCGAAACACATGGATGGGATCATGATGTTGGTTATGAAGGTATAAATGCAGAGAAGTTGTTTGTCGTCAAAGACACAATACCCATCTCTTTTAGTGGCCAAGTTACAAAGGATAAGAAGGATGCAAATGTTCAAATAGAGATGACCAGTTCGATTAAGCATGGGGAAACTAAAGCATCTTCCATTGGTTTCGATATGCAGACCGTCGGGAAGGATTTGGCCTATACATTACGTGGCGAGACAACATTTATTAATTTTAGGAAGAACAAGGCAATTGCTGGTCTGTCAGTTGCCCTATTAGGCGATGCCTTGTCTGCCGGATTCAAAGTTGAAGACAAGTTGATTGCTAACAAGCGATTTCGATTAGTTGTGACTGGGGGAGCAATGACCGGTAGGGGAGATGTAGCTTATGGTGGCAGCCTGGAGGCTCAATTGAGAGATAAAGACTATCCTTTGGGTCGTTCACTTTCAACTCTTGGGCTCTCAGTCATGGATTGGCATGGAGATCTTGCTATTGGTTGCAACGTACAATCTCAAGTTCCCATAGGACGATCGACGAATCTGATTGCTCGTGTGAATCTGAATAACAGGGGGGCAGGGCAAGTCAGCTTTCGGTTAAACAGCTCAGAACAGCTTCAGATAGCTATTGTTGGGCTCCTTCCTCTATTGAGAAAGCTTCTGGGTTGTTATCAATACTGGCAGGATGGACAATGA 3771 43.81 MENGVEVVDGLHDGEKKFVGDGVSRDRVDETVVVGSHESKDTEGEDVFEEALDGKDHLIEQSPKYGSVNGNIAEEEEINGFTSGVTSNHPNSAHDEEKFEEAIEASRVNENPVVEEQDVNSDKETEGLDGKLVDNAVVASIIDERGTEEEAVTSELNERKDDELDFSRNDSRIKTLENGASPEVVVLKDGDEDDLKYGSKSTKSENNDSNNLNVTSSSDDELVNKSADLVGDTNLDSTSEFLTENRDHVELNGKSLGTEFSNHVEETEEPLNVPVVDLDNLDITNAERRDDSLHVDLELPNNDSEDIKEATTSIEPKKDDNKNEESSSACMTTTNQDHRTEEVTTTNQDHRNEEVTTADENHRMEEVKNDSIGKDSEKQSRESRELNGTTSDDQHEPMGENEISLETVKDISASEKIADEKIEKIQDSESDVKVREDNTSRHQHPVDSSNNGPDILGVEKTESKDKVGQDKTQVNRDTEIQPASIIASSSGKSTNPTPPARPAGLGRAAPLLEPAPRVVQPPRVNGTVSHVQMQQIDDPVNGDAEENDDTREQLQMIRVKFLRLAHRLGQTPHNVVVAQVLYRLGLAEQLRGRNGGRVGAFSFDRASAMAEQLEAAGQEPLDFSCTIMVLGKTGVGKSATINSIFDEVKFSTDAFQMGTKKVQDVVGTVQGIKVRVIDTPGLLSSWSDQRQNEKILLSVKRFIKKTPPDIVLYLDRLDMQTRDFSDMPLLRTITEIFGPSIWFNAIVVLTHAASAPPDGPNGTASSYDMFVTQRSHVVQQAIRQAAGDMRLMNPVSLVENHSACRTNRAGQRVLPNGQVWKPHLLLLSFASKILAEANTLLKLQDSPPGRPFTPRSKSPPLPFLLSSLLQSRPQVKLPEEQFGDDDGLEDDLDESSDSENESEYDELPPFKRLTKVQVAKLSKAQKKAYFDELEYREKLFMKKQLKEEKRRRKMMKKMAAEAKDQHSDGSENVEEDPGAAASVPVPMPDLALPASFDSDNPTHRYRYLDSSNQWLIRPVLETHGWDHDVGYEGINAEKLFVVKDTIPISFSGQVTKDKKDANVQIEMTSSIKHGETKASSIGFDMQTVGKDLAYTLRGETTFINFRKNKAIAGLSVALLGDALSAGFKVEDKLIANKRFRLVVTGGAMTGRGDVAYGGSLEAQLRDKDYPLGRSLSTLGLSVMDWHGDLAIGCNVQSQVPIGRSTNLIARVNLNNRGAGQVSFRLNSSEQLQIAIVGLLPLLRKLLGCYQYWQDGQ* 1257
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5053160 5056930 + Chy1G006910.1 Chy01g00691 217872

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy01g00691 1256 MobiDBLite consensus disorder prediction 144 172 - -
Chy01g00691 1256 MobiDBLite consensus disorder prediction 883 903 - -
Chy01g00691 1256 ProSiteProfiles AIG1-type G domain profile. 622 851 IPR006703 GO:0005525
Chy01g00691 1256 MobiDBLite consensus disorder prediction 342 403 - -
Chy01g00691 1256 MobiDBLite consensus disorder prediction 1 23 - -
Chy01g00691 1256 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 618 759 IPR027417 -
Chy01g00691 1256 Pfam Translocase of chloroplast 159/132, membrane anchor domain 983 1246 IPR024283 -
Chy01g00691 1256 PANTHER TRANSLOCASE OF CHLOROPLAST 120, CHLOROPLASTIC-LIKE 408 1248 - -
Chy01g00691 1256 MobiDBLite consensus disorder prediction 412 443 - -
Chy01g00691 1256 MobiDBLite consensus disorder prediction 81 131 - -
Chy01g00691 1256 MobiDBLite consensus disorder prediction 458 473 - -
Chy01g00691 1256 MobiDBLite consensus disorder prediction 186 201 - -
Chy01g00691 1256 MobiDBLite consensus disorder prediction 959 982 - -
Chy01g00691 1256 MobiDBLite consensus disorder prediction 144 268 - -
Chy01g00691 1256 Gene3D - 594 842 IPR027417 -
Chy01g00691 1256 MobiDBLite consensus disorder prediction 879 909 - -
Chy01g00691 1256 PANTHER GTPASE, IMAP FAMILY MEMBER-RELATED 408 1248 IPR045058 -
Chy01g00691 1256 MobiDBLite consensus disorder prediction 116 130 - -
Chy01g00691 1256 MobiDBLite consensus disorder prediction 285 507 - -
Chy01g00691 1256 Pfam AIG1 family 625 758 IPR006703 GO:0005525
Chy01g00691 1256 MobiDBLite consensus disorder prediction 202 223 - -
Chy01g00691 1256 MobiDBLite consensus disorder prediction 959 973 - -
Chy01g00691 1256 MobiDBLite consensus disorder prediction 285 325 - -
Chy01g00691 1256 MobiDBLite consensus disorder prediction 91 105 - -
Chy01g00691 1256 TIGRFAM 3a0901s04IAP86: chloroplast protein import component Toc86/159, G and M domains 501 1249 IPR005690 GO:0003924|GO:0005525|GO:0009707|GO:0045036
Chy01g00691 1256 CDD Toc34_like 597 842 - -
Chy01g00691 1256 Coils Coil 945 965 - -
Chy01g00691 1256 MobiDBLite consensus disorder prediction 474 497 - -
Chy01g00691 1256 MobiDBLite consensus disorder prediction 326 341 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy01g00691 - - - csv:101205042 2303.86
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g00691 Chy-Chr1:5053160 Chy07g01687 Chy-Chr7:20729850 0 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g129 . . . . . Bpe12g00112 . . Cmo19g00737 . . . . . Sed08g0469 . Cpe15g00583 Bhi05g01734 Tan02g0702 Cmetu06g1183 . Hepe02g0438 . . Cla02g00439 Cam02g0448 Cec02g0446 Cco02g0466 Clacu02g0450 Cmu02g0444 Cre02g0778 Cone2ag0203 Cone16ag0840 . . . Csa07g00087 . Cme01g01277 Blo04g00558 Blo13g00521 . Bda14g00607 Bpe15g00822 . Bma03g00599 Bma08g00616 . . . Cma11g01385 Cma19g00728 . Car19g00558 . . . . . . . . . . . . . . . . Lsi11g01187 . Chy01g00691 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005811 1 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 2 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy01g00691 Chy_Chr01 FPKM 2.166985 4.006216 4.807907 3.263958 4.575823 5.108582 4.29086 10.228565 10.042211 11.73621