Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy01g00699 ATGTCGAATTCCTCTTCGAACATGCCCCAGAATGGGAATGTTAAAAACAATGATACGTTATTCACAGTGGATGAGATTGAAGAAAGTGAGTTTTCGAAGCTGTTGGATAGGCCAAGGCCGTTGAACATGGAGAGACAGAGGTCGTTCGATGAAAGATCGCTTGGGGATTTGGCGATTGGTTTTTCTCCACGGTTATCATCGAGAGTTTCTTCAGAAAACTTTGGTCGATTGAGTGATAATTACGATCATTCTCCATCGCCGGGTAGAAAATCGGATTTCAATACTCCAAGATCACACACTGGATTCGAGCAGCATCCCATGGTGGCCGAAGCTTGGGAAGCTTTGAGGCGTTCGTTGGTCTATTTCCGTGGCCAACCAGTTGGTACTATTGCGGCGTTGGACAGTACTGAAGAAAATCTTAACTATGATCAAGTGTTTGTGAGAGACTTTGTCCCAAGTGCGTTTGCTTTTCTAATGAATGGGGAGCCTGAAATAGTAAAAAACTTTATCCTAAAAACTCTTCGGCTTCAGTCATGGGAGAAAAAGATTGATAGATTCCAGCTTGGAGAAGGGGTGATGCCTGCTAGTTTCAAAGTTCTTCATGATCCAGTGAGGAACACTGAAACTTTAATTGCAGATTTTGGAGAGAGTGCAATAGGAAGAGTTGCTCCTGTTGACTCTGGATTTTGGTGGATTATATTGCTTAGAGCATACACAAAGTCCACTGGTGACAGTTCATTGGCTGAACTACCAGAATGCCAAAAGGGAATGCGCCTTATTTTGAGTCTGTGTCTTTCAGAAGGTTTTGACACATTCCCAACCCTTCTCTGTGCCGATGGATGCTGCATGATTGATCGACGAATGGGTGTATATGGCTACCCAATTGAAATTCAGGCACTTTTCTTTATGGCTTTAAGGTGTGCTTTGATTTTGCTTAAGCAAGACCACGAGGGGAAGGACTTTGTAGAAAGAATAACAAAACGGCTGCACGCCATGAGCTATCACATGAGAACTTACTTTTGGATCGACCTAAAGCAACTAAATGATATATACCGATATAAAACTGAAGAATACTCTCATACTGCTTTGAACAAGTTCAACGTAATACCTGATTCTCTTCCTGAATGGATTTTTGACTTCATGCCAACTCGTGGTGGATACTTCATTGGAAATGTCAGTCCTGCAAGAATGGACTTCCGTTGGTTTTGCTTGGGAAACTGCATTGCAATTCTTTCTGCCTTGGCAACACCAGAACAAGCCACTGCTATTATGGATCTTATTGAATCGCGGTGGGAAGAGCTGGTTGGAGAAATGCCGTTAAAGGTTTGTTACCCTGCCATTGAAAGCCACGAGTGGCGAATTGTAACTGGATGTGACCCAAAAAATACAAGATGGAGTTACCATAACGGTGGTTCATGGCCAGTTCTCCTATGGCTTCTAACAGCTGCATGTATCAAGACCGGGCGACCGCAGATTGCAAGACGTGCACTCGAACTGGCTGAATCCAGGCTACTGAAAGACAACTGGCCAGAATATTATGATGGGACACTTGGACGGTACATCGGGAAACAGGCACGAAAGTTTCAGACGTGGTCAATTGCAGGTTACCTAGTTGCAAAGATGATGCTGGAAGACCCTTCTCATTCAGGCATGGTGTCCTTGGAGGAAGATAAGCAGATGAAGCCTTTAATGAAAAGGTCACATTCATGGACTTATTGTTACGATCCCTTGGATCCTAATGGAAACATTACCATTACTTATGATATTCAAACTTGGACCACTCGTGGATATGTGGGGAGAGTTACTGTCCAAAACTACTATCAGTTCCGTCATGTTGAGAATCCAGGTTGGAAGTTGGGGTGGACATGGACGAGGGGTGAAGTCATCTGGTCAATGAATGGAGCTTTTGCAACCGAACAGGGGAATTGCTCGTTGTTCAAATTTGACATTCCACATTCCTGTGAGGAGAGCCCTGTCATTCTTGATCTCATGCCGGAGGCATCACCGGAGAACAGGTCGGAGGGTTGTTGCCGCAGTGGGGTTCTTTCTGCTTGGGCTGTGGATCCTTCCAAGTCTTTCTCTTCGTTTGAGATCTCAGTGGGGAGCACGGACGAAGATGGCAATGAGCAACCACCCGCCAATATTACTCTCATGGCACCTGGTCCTGGTTACACTTGCAGCCCGTTTTTGGACTCTCGTCCAACTATTTCTTCTGTAATTGATGGCAAAAGAGAAGTTCAGGTTTTCAGAACTTGGAAATCAACATGTACTTACTCCATATTTGTGGATAACAAGACACCAGTCTGTTGTGTCTCACTCTCAGCGTTTTACAATCCCTCCATCACACCTTGCCCTTCATGCAGCTGTGGATGCAGAAAAGCAAACAAGAGCTCTGTTCAATGTACAAGAGACGAATACCAGTTGTCATCCACGGATTCTGCTACTAATCTTTCCTCCGTACGGTGCTCGGATCACATGTGCCCGGTTCGAGTGCATTGGCATGTTAAGACAAACTATATCAACCATTGGAGAGTGAAACTCACGGTTTCTAACTATAACTATAACAGAAACTACTCAAACTGGAACATCCTAGTGCAGCATCCAGGATTTAGCCAATCAACAGAAGCATTTAGTTTCAATAGATCGCAACTTCCATCCTTCAGATTTGGGGATGAGTTGGCTCTCTTTTGGGGCATAGAGGATTTCAACACAGAGCTCGTGCAGTCAACTGAGAGCAATATGGGGTATGTGACGACAGATGTTCTTCTTGAGAAAGATTTGGAATCGTTCACATTAAGCAATGGTTGGGCATTTCCAAGAAGAGTATATTTCAATGGAGATAACTGTCATATGGCTTTACCAGATACCTTCCCAATGCTACCAAATGGGAATCCTAAACAAAGCCTCTCACTTTACCTCTTCATTCTTCTCTTCTTTCTTGACCTTTTTGTTTTGGTGAAAGTATAG 2967 43.95 MSNSSSNMPQNGNVKNNDTLFTVDEIEESEFSKLLDRPRPLNMERQRSFDERSLGDLAIGFSPRLSSRVSSENFGRLSDNYDHSPSPGRKSDFNTPRSHTGFEQHPMVAEAWEALRRSLVYFRGQPVGTIAALDSTEENLNYDQVFVRDFVPSAFAFLMNGEPEIVKNFILKTLRLQSWEKKIDRFQLGEGVMPASFKVLHDPVRNTETLIADFGESAIGRVAPVDSGFWWIILLRAYTKSTGDSSLAELPECQKGMRLILSLCLSEGFDTFPTLLCADGCCMIDRRMGVYGYPIEIQALFFMALRCALILLKQDHEGKDFVERITKRLHAMSYHMRTYFWIDLKQLNDIYRYKTEEYSHTALNKFNVIPDSLPEWIFDFMPTRGGYFIGNVSPARMDFRWFCLGNCIAILSALATPEQATAIMDLIESRWEELVGEMPLKVCYPAIESHEWRIVTGCDPKNTRWSYHNGGSWPVLLWLLTAACIKTGRPQIARRALELAESRLLKDNWPEYYDGTLGRYIGKQARKFQTWSIAGYLVAKMMLEDPSHSGMVSLEEDKQMKPLMKRSHSWTYCYDPLDPNGNITITYDIQTWTTRGYVGRVTVQNYYQFRHVENPGWKLGWTWTRGEVIWSMNGAFATEQGNCSLFKFDIPHSCEESPVILDLMPEASPENRSEGCCRSGVLSAWAVDPSKSFSSFEISVGSTDEDGNEQPPANITLMAPGPGYTCSPFLDSRPTISSVIDGKREVQVFRTWKSTCTYSIFVDNKTPVCCVSLSAFYNPSITPCPSCSCGCRKANKSSVQCTRDEYQLSSTDSATNLSSVRCSDHMCPVRVHWHVKTNYINHWRVKLTVSNYNYNRNYSNWNILVQHPGFSQSTEAFSFNRSQLPSFRFGDELALFWGIEDFNTELVQSTESNMGYVTTDVLLEKDLESFTLSNGWAFPRRVYFNGDNCHMALPDTFPMLPNGNPKQSLSLYLFILLFFLDLFVLVKV* 989
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5113736 5122842 + Chy1G006990.1 Chy01g00699 217880

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy01g00699 988 PANTHER - 1 571 IPR024746 GO:0033926
Chy01g00699 988 Pfam Alkaline and neutral invertase 111 546 IPR024746 GO:0033926
Chy01g00699 988 Pfam COBRA-like protein 597 759 IPR006918 GO:0010215|GO:0031225
Chy01g00699 988 PANTHER ALKALINE/NEUTRAL INVERTASE B-RELATED 1 571 - -
Chy01g00699 988 MobiDBLite consensus disorder prediction 76 100 - -
Chy01g00699 988 SUPERFAMILY Six-hairpin glycosidases 110 539 IPR008928 GO:0005975
Chy01g00699 988 Gene3D - 135 540 IPR012341 GO:0005975
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy01g00699 - - - csv:101204549 1171.38
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g00699 Chy-Chr1:5113736 Chy01g01236 Chy-Chr1:14994840 0 dispersed
Chy06g01797 Chy-Chr6:21574943 Chy01g00699 Chy-Chr1:5113736 6.90E-30 dispersed
Chy12g01483 Chy-Chr12:18727904 Chy01g00699 Chy-Chr1:5113736 4.07E-37 dispersed
Chy01g00699 Chy-Chr1:5113736 Chy02g02401 Chy-Chr2:27765988 2.36E-137 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g97 . . Bda06g00969 . . . . Bma12g00525 . Cmo11g01723 . . . . . Cpe04g00574 . Bhi05g01747 . . . . . . Cla02g00449 Cam02g0456 Cec02g0455 Cco02g0474 Clacu02g0457 Cmu02g0452 Cre02g0786 Cone12ag1209 Cone8ag1261 . . . Csa07g00078 . Cme01g01286 . . . . . . . . . . . Cma11g01397 . . . . . . . . . . . . . . . . . . . Lsi11g01179 . Chy01g00699 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008827 2 4 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 3 1 0 1 1 0 2 1 1 1 1 1 2 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy01g00699 Chy_Chr01 FPKM 5.334826 4.754344 6.133438 7.858642 11.704248 9.037127 9.515665 10.322847 10.775838 11.93104