Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy01g00730 ATGGGTGATACTGAAGATGCTCGTACTGATAACTTGCGAAATCTTCAATGTTCGTTTGGAACATCTTCATCTTCTGCTTTAAAGCATCATTTCTCTATGGATCAACTTAAAATTTCTCAAATGACCTGCTCTCAAGGCCGTCCACAGCATTTCCAGTCGAATTTTCTTGGGGATAATAATAGACGAATTGGGATACCTCCTTGTCCCAACTCGCCGCAGGTCCCACCAATCTCACCGTATTCTCAGATCCCGGTATCCCGTCCGATGAACCAACATAGTTATAATTCAGTTCCTACTCATTCTCGATCGTTATCTCAGCCTTCTTTTTTCTCTCTCGATTCTTTGCCCCCTTTAAGTCCGTCCCCATTTCGTGACTCCCCATCTACATCGAATTCAGATCAGGTTTCTGCCGATACGTCAATGGAGGATAGGGATGCCAGTTCACATTCTTTGTTGCCTCCTTCACCTTATACGAGGGCCAATTCTTCGAAGATGGGTGATGCTTTACCTCCTCGTACAGCCCATAGGCGGTCTAACAGTGATATTCCATTTGGATTATCTTCGATGATTCAGTCACCTCCCGTTCTCTCTTTTAGTGGCTCAGGTGGATTGGAGCGATCAACAAGTAGCAAAGAGAATGCGGGAATATTTAAGCAAGCCAGCCAGTTTGTTAAAAGAGAACCTAGTTTGGAGAAAAGCATTGATAACCATATGGAAGGAATGGGTGTAAAGAAGTCTGAAGGGGACACTGTGGATGATTTATTCTCTGCTTATATGAATTTGGATAATATTGATTTGTTCAACTCCTCAGGGACTAACGACAAGAATGGTCATGAGAATCGGGAGGATTTGGATAGTAGAGGCAGTGGTACAAAGACAGGGGGTGAGAGCAGTGATAATGAAGCAGAAAGCAGTGTTAACGAAAGTGGGGATAACTCTCAAATGCCTGGATTGAATTCGTCTGCCGAGAAGAGGGAAGGGATTAAACGGACTGCTGGGGGAGATATTGCTCCAAATAACAGACATTACCGGAGTATCTCTATGGATAGCTTCATGGGCAAGGTGCAGTTTGGTGATGAGTCACCCAAAATGCCTCCTACACCACCTGGCATTCGTCCGGGGCAACTTTCTTCAAACAACCTTGTTGACGGTAATTCAACTCCATTCAGCTTGGACTTTGGTAATGGTGAGTTCAGTGGGGCTGAACTGAAGAAAATTATGGCAAATGACAAACTAGCTGAGATTGCACTAACTGATCCTAAACGTGCAAAGAGGATCTTGGCAAACCGTCAATCTGCTGCTCGATCGAAGGAACGTAAGATGCGGTATATATCTGAATTGGAACACAAGGTTCAGACTCTTCAGACAGAAGCTACCACACTATCTGCCCAACTCACACTTTTGCAGAGAGATTCAGTTGGACTTACAAACCAGAATAATGAACTGAAGTTTCGTCTCCAAGCCATGGAACAGCAAGCACAACTACGGGATGCTCTTAACGAAGCCTTAACCGCGGAGGTTCAGAGATTGAAACTCGCTACAACGGAGCTAAACGCCCAATCTCATCCCTCTAATGGGGTAATGTCCCAAGCTGCCATCAATCACCATAGCCTCCAGCTTCAACTTCAGCACCACCAACAACAGCAACAGATGCAACAGAATGGAAGTGCAACCACAAAACCAGAATCCAACCAATAA 1698 44.7 MGDTEDARTDNLRNLQCSFGTSSSSALKHHFSMDQLKISQMTCSQGRPQHFQSNFLGDNNRRIGIPPCPNSPQVPPISPYSQIPVSRPMNQHSYNSVPTHSRSLSQPSFFSLDSLPPLSPSPFRDSPSTSNSDQVSADTSMEDRDASSHSLLPPSPYTRANSSKMGDALPPRTAHRRSNSDIPFGLSSMIQSPPVLSFSGSGGLERSTSSKENAGIFKQASQFVKREPSLEKSIDNHMEGMGVKKSEGDTVDDLFSAYMNLDNIDLFNSSGTNDKNGHENREDLDSRGSGTKTGGESSDNEAESSVNESGDNSQMPGLNSSAEKREGIKRTAGGDIAPNNRHYRSISMDSFMGKVQFGDESPKMPPTPPGIRPGQLSSNNLVDGNSTPFSLDFGNGEFSGAELKKIMANDKLAEIALTDPKRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQLRDALNEALTAEVQRLKLATTELNAQSHPSNGVMSQAAINHHSLQLQLQHHQQQQQMQQNGSATTKPESNQ* 566
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5316807 5332218 - Chy1G007300.1 Chy01g00730 217911
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy01g00730 565 MobiDBLite consensus disorder prediction 58 191 - -
Chy01g00730 565 Coils Coil 500 520 - -
Chy01g00730 565 CDD bZIP_plant_RF2 422 471 IPR044759 GO:0003700|GO:0006355
Chy01g00730 565 MobiDBLite consensus disorder prediction 275 289 - -
Chy01g00730 565 MobiDBLite consensus disorder prediction 268 342 - -
Chy01g00730 565 Gene3D - 420 472 - -
Chy01g00730 565 Pfam bZIP transcription factor 421 475 IPR004827 GO:0003700|GO:0006355
Chy01g00730 565 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 419 482 IPR004827 GO:0003700|GO:0006355
Chy01g00730 565 MobiDBLite consensus disorder prediction 68 82 - -
Chy01g00730 565 MobiDBLite consensus disorder prediction 355 383 - -
Chy01g00730 565 MobiDBLite consensus disorder prediction 290 320 - -
Chy01g00730 565 SMART brlzneu 417 481 IPR004827 GO:0003700|GO:0006355
Chy01g00730 565 PANTHER ZIPPER TRANSCRIPTION FACTOR FAMILY PROTEIN, PUTATIVE ISOFORM 1-RELATED 76 562 - -
Chy01g00730 565 SUPERFAMILY Leucine zipper domain 421 472 IPR046347 GO:0003700|GO:0006355
Chy01g00730 565 MobiDBLite consensus disorder prediction 83 115 - -
Chy01g00730 565 Coils Coil 437 492 - -
Chy01g00730 565 MobiDBLite consensus disorder prediction 539 565 - -
Chy01g00730 565 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 76 562 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g00730 Chy-Chr1:5316807 Chy03g00519 Chy-Chr3:7178412 1.09E-51 dispersed
Chy04g01684 Chy-Chr4:23218216 Chy01g00730 Chy-Chr1:5316807 1.40E-06 dispersed
Chy01g00730 Chy-Chr1:5316807 Chy11g00653 Chy-Chr11:7905677 7.62E-20 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17289 PF00170 bZIP_1 7.50E-09 CL0018 Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy01g00730 - - csv:101215703 1007.67