Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy01g00746 ATGTACCGTTTCTTCTTCTGCACTTCACAAATCTTCGTTCTTCAGCGGCTGTTCTCCCGCGAATCTCATCCCCTTGCAGTTCCGTTCCTAATTTTGCATCTTCACCCATTGAAGCTACGCAGTATCGCCCACAAACACATAGCCATTGGCATTAGTCGAGACAATCTTTGCAAGAATTGCAAGCGGCCAGGCCATTTTGCAAGAGAATGTCCCAATGTGGCAATTTGTCACAATTGTGGTCTGCCTGGGCATATTGCTTCAGAGTGCACAACAAAATCACTATGTTGGAACTGCCGAGAACCTGGTCACATGGCAAGTAGCTGTCCCAATGAAGGCATTTGTCACACCTGTGGTAAGGCGGGACATCGAGCCAGGGACTGTACGGCTCCTCCCATGCCACCTGGAGACTTGAGACTTTGCAATAATTGCTACAAGCAAGGTCATATAGCAGCTGATTGTACTAATGAGAAGGCATGCAACAATTGTAGGAAGACAGGCCATCTTGCTCGTGATTGTCCAAATGACCCTATTTGCAACCTGTGTAATGTATCAGGGCATGTTGCCAGACAGTGTCCCAAGTCCAATGTCCTCGGAGACCGGGGAGACCGAGGCATCAGCAGTGGTGGCGGCAGTGGACGTGGTAGTGGTAGTGGTTATCGAGACGTCGTGTGCAGGAACTGCCAGCAACTTGGCCATATGAGTAGGGATTGCATGGGTCCTTTGATGATCTGCCATAATTGCGGGGGACGTGGTCACCTGGCATACGAATGCCCTTCTGGTCGGTTCATGGATCGTTATCCTAGGAGGTACTGA 813 49.94 MYRFFFCTSQIFVLQRLFSRESHPLAVPFLILHLHPLKLRSIAHKHIAIGISRDNLCKNCKRPGHFARECPNVAICHNCGLPGHIASECTTKSLCWNCREPGHMASSCPNEGICHTCGKAGHRARDCTAPPMPPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDCPNDPICNLCNVSGHVARQCPKSNVLGDRGDRGISSGGGSGRGSGSGYRDVVCRNCQQLGHMSRDCMGPLMICHNCGGRGHLAYECPSGRFMDRYPRRY* 271
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5499784 5505932 + Chy1G007460.1 Chy01g00746 217927

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy01g00746 270 ProSiteProfiles Zinc finger CCHC-type profile. 57 72 IPR001878 GO:0003676|GO:0008270
Chy01g00746 270 ProSiteProfiles Zinc finger CCHC-type profile. 224 237 IPR001878 GO:0003676|GO:0008270
Chy01g00746 270 ProSiteProfiles Zinc finger CCHC-type profile. 244 259 IPR001878 GO:0003676|GO:0008270
Chy01g00746 270 ProSiteProfiles Zinc finger CCHC-type profile. 178 193 IPR001878 GO:0003676|GO:0008270
Chy01g00746 270 SUPERFAMILY Retrovirus zinc finger-like domains 74 111 IPR036875 GO:0003676|GO:0008270
Chy01g00746 270 ProSiteProfiles Zinc finger CCHC-type profile. 76 89 IPR001878 GO:0003676|GO:0008270
Chy01g00746 270 PANTHER - 46 270 - -
Chy01g00746 270 Pfam Zinc knuckle 223 237 IPR001878 GO:0003676|GO:0008270
Chy01g00746 270 Pfam Zinc knuckle 113 128 IPR001878 GO:0003676|GO:0008270
Chy01g00746 270 Pfam Zinc knuckle 76 90 IPR001878 GO:0003676|GO:0008270
Chy01g00746 270 Pfam Zinc knuckle 56 72 IPR001878 GO:0003676|GO:0008270
Chy01g00746 270 Pfam Zinc knuckle 95 110 IPR001878 GO:0003676|GO:0008270
Chy01g00746 270 Pfam Zinc knuckle 158 174 IPR001878 GO:0003676|GO:0008270
Chy01g00746 270 Pfam Zinc knuckle 139 155 IPR001878 GO:0003676|GO:0008270
Chy01g00746 270 Pfam Zinc knuckle 243 259 IPR001878 GO:0003676|GO:0008270
Chy01g00746 270 Pfam Zinc knuckle 177 193 IPR001878 GO:0003676|GO:0008270
Chy01g00746 270 SUPERFAMILY Retrovirus zinc finger-like domains 215 261 IPR036875 GO:0003676|GO:0008270
Chy01g00746 270 Gene3D - 51 73 - -
Chy01g00746 270 PANTHER OS10G0545300 PROTEIN 46 270 - -
Chy01g00746 270 Gene3D - 112 157 - -
Chy01g00746 270 Gene3D - 158 208 - -
Chy01g00746 270 ProSiteProfiles Zinc finger CCHC-type profile. 140 155 IPR001878 GO:0003676|GO:0008270
Chy01g00746 270 SMART c2hcfinal6 56 72 IPR001878 GO:0003676|GO:0008270
Chy01g00746 270 SMART c2hcfinal6 113 129 IPR001878 GO:0003676|GO:0008270
Chy01g00746 270 SMART c2hcfinal6 177 193 IPR001878 GO:0003676|GO:0008270
Chy01g00746 270 SMART c2hcfinal6 158 174 IPR001878 GO:0003676|GO:0008270
Chy01g00746 270 SMART c2hcfinal6 243 259 IPR001878 GO:0003676|GO:0008270
Chy01g00746 270 SMART c2hcfinal6 139 155 IPR001878 GO:0003676|GO:0008270
Chy01g00746 270 SMART c2hcfinal6 75 91 IPR001878 GO:0003676|GO:0008270
Chy01g00746 270 SMART c2hcfinal6 94 110 IPR001878 GO:0003676|GO:0008270
Chy01g00746 270 SMART c2hcfinal6 223 239 IPR001878 GO:0003676|GO:0008270
Chy01g00746 270 Gene3D - 218 261 - -
Chy01g00746 270 ProSiteProfiles Zinc finger CCHC-type profile. 159 174 IPR001878 GO:0003676|GO:0008270
Chy01g00746 270 ProSiteProfiles Zinc finger CCHC-type profile. 95 110 IPR001878 GO:0003676|GO:0008270
Chy01g00746 270 Gene3D - 74 111 - -
Chy01g00746 270 SUPERFAMILY Retrovirus zinc finger-like domains 54 73 IPR036875 GO:0003676|GO:0008270
Chy01g00746 270 SUPERFAMILY Retrovirus zinc finger-like domains 134 175 IPR036875 GO:0003676|GO:0008270
Chy01g00746 270 ProSiteProfiles Zinc finger CCHC-type profile. 114 127 IPR001878 GO:0003676|GO:0008270
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy01g00746 K09250 CNBP; cellular nucleic acid-binding protein - csv:101213305 467.233
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g00746 Chy-Chr1:5499784 Chy02g02292 Chy-Chr2:26991076 3.17E-08 dispersed
Chy01g00745 Chy-Chr1:5477728 Chy01g00746 Chy-Chr1:5499784 1.54E-30 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g39 . . . . . Bpe12g00094 . . Cmo19g00702 . . . . . . Cpe04g00102 Cpe15g00562 Bhi05g01259 . . . . . . Cla02g00487 Cam02g0496 Cec02g0497 Cco02g0502 Clacu02g0500 Cmu02g0495 Cre02g0828 . . . . . Csa07g00035 . Cme01g01346 Blo04g00539 Blo13g00534 Bda15g01066 Bda14g00579 Bpe15g00842 . Bma03g00573 Bma08g00782 . . . . Cma19g00691 . . . . . . . . . . . . . . . . . . . . Chy01g00746 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004531 3 4 2 1 2 1 0 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 2 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy01g00746 Chy_Chr01 FPKM 8.379177 9.760775 8.618171 8.2513 7.697335 7.452544 7.175413 13.872244 12.862735 13.611006