Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy01g00747 ATGGAAGCCGAAGAAGATGATTCTTCATATCAGGACCAAAAATCTTCTTCTTTGTATGTTGATGATGCAAAATTAGATGTTAAGTGTGACACCAATCGTGAAGAGCTTCATAGCAATGAACAACAGCATTGTGTGTCCAAGTCCTCAATTATCGAAACGGAGTTTTCACCTAATACCGTTGTGGAATCTTTACCACCAAGAGATGCAATTCTTGGGGATGAGATTCTTGCTGTGGATACTTGTTCAGAGATGGAGAAGAAGGATTTGGTGGAGGAGAGAGAGATGGCAGAGGAGAAAGATTTTCGCAACATTATTCAAGATATGGCGGAAGATTCAGTGAAGTTGGAGATTGAACCTGGTATTGCGAAAGCGGGGTTATTGGAGCAAAGGGCTTTCGATGATGTGAAAAAGAATACAGGGGTGACGGAGGAGAAGGCTTTGAGTGAATTTGCTGAAGGTGAGTTGTTACCGGGGATGGTTTTTGTTGGTGTCGCTGAAAATCAGGTTGAGGGCAACGTTTTAATGGCGAATTTTTCAGAGCATACGGTCGTAGGCGGTTCAGTTGGCTGTGTAGAGACAACCGAGACGACGTGTCTGAGGGATGTTTTGGCTGAGGAAACGCTTGCAGAAACGACACTTTTTGTGCAGGATGTAGATGTTACTGATGCAACCAATTTGGTGCAGAAGACAGAGTTGGAAGAGCACGCTGATGACGCCAATGATTTGAAGGATACAGAGATGCCAAAGCAAGAAAATTTTGCTGTGGAGAAGATGGAATTAGGCGTCCAGGTGCAGTTGGAAGAGGACTCTGAGTTGAAAGTTAGTTTGGTAGATGGGGCTGTGGAGGGTCGGACGGAAAATTTAGCAGACAGAACTGGTGAAACGTTGAAGATGGAGAATGCCTCAAGCACTAGTAATGAGGTCGGGCTGACACATTTTGCTGTGGAGATTAAGGAGACGGTAAATATAGGAAATGAAGAAGACAAGACTACGGAGATGGATGGAATGTGTGTGGAAGAAAAGGCTACTGATGTGGGGATAATGGAGAATTTGGCAGATGAGACCCCAGAGATCAAGGGAGTGGACGTAGCAGATTACAGCATTGAAGAGTTGAAGATCGAAGACATGGAGGATAGGGAAGCGGGGGTGCAAGGATTGGGTTTGGCCGATGAGAGCCCCGTGGTTGAGAAGCTCGAGAATGTGACAGATGAGAATGCAGAGGCTGAGGGAGTGCAAGTGACTGACTACACCGCGGAAGAAGTAAAATCGGAGAATGTAGAAAATGACAAGACTGCACAAGGGGAGGAAGTAGCTATGGGAGAAGAGATTGCGGAGCCAGATGACATGGTTTATTTGGTGGATGAAGGGATTGGATCAGAGGAGACAGATGTAAACATGACATATTTAGTGGAGGAAACGGAAGCAGCAGAGGAGGTTGAGGAGATGGATGTTACAGAAGAGGTGGATGAGCCAAATATAAGTAGCAGTGGGTCTAAAAGGAAGCGTGGAAAGAATTCTAAAGCTCCACCTAGAGTGGCTTCCAGGAAGAAGGTGGAAGAGGACGTTTGCTTTATTTGTTTTGATGGGGGTGATCTTGTTCTCTGTGATCGCAGAGGTTGTCCCAAGGCATACCACCCGGCCTGTATTAATCGTGATGAGGCATTCTTCCGAGCCAAGGGTCGATGGAATTGTGGTTGGCATCTCTGTAGTAACTGTGAGAAGACTGCCCATTACATGTGTTACACATGTACTTTTTCCTTGTGCAAGGGCTGCATAAAAAATGCGGTTATTTTGTGTGTTAGAGGGAATAAAGGCTTCTGCGAGACATGCATGAGATTTGTTACGTCGATTGAAAAGAATGAGCAGGGGAATACAGAAAAGGGCCAAATCGATTTTAATGACAAAAATAGCTGGGAATATCTTTTCAAGGAGTACTGGACAGATCTGAAGGGAAGTCTTTCTCTAACATTTGATGAACTTGTTCACGCCAAAAACCCATGGAAAGGATCTGAGACACTAACTAGCAGGCCTGATTCACCCGGTGAGCTATGTGATGGTAATGTTGATGGAGGATCAGATTTGGATGTTTCTGAAAATGAAGAATCTGGTAGTTCTAAAAAGAGAAAAGCTAAGAAAAGGTCAAGATCTCAAGCAAAGGAAATGAGTTCACCTAGTATGCCAGCTATAGCTTCTCAAGGGCTATCCACGGATGACAATGTTGAGTGGGGATCTAAAGAGCTCTTGGAGTTTGTAATGCACATGAAGAATGGTGATAGGACTGTTTTATCTCAGTTTGACGTGCAGGCTCTCTTATTAGAATATATTAAAAGAAATAAGCTTCGTGATCCTCGACGGAAAAGTCAGATAATATGTGATTCAAGGCTTGAGAGTTTGTTTGGAAAGCCACGTGTGGGACATTTTGAAATGTTGAAGCTCCTCGAGTCACACTTCCTTATCAAAGAGGATGCCCAGATAAATGATCTGCATGGGAGTGTTGCTGAAACTGAATCGAGTCAGTTGGAGGCTGATGGGACTGATGGGTCAGGCAAGATTAAGAAAGAGAAAAAACGCAGGACGAGGAAAAAAGATGAGAGAGGATTGCAGTCTAACCTTGATGACTATGCAGCTATTGATATTCATAACATTAATTTAATTTACTTAAAACGTAACTTGGTGGAATATCTGATCGAAGACGAGGAGAGTTTTCATGACAAGGTTGTTGGTTCTTTTGTGAGGATAAGAATATCAGGCAGTGCACAAAAACAAGATTTATATCGGCTGGTTCAAGTTGTAGGTACAAGTAAAGCATCCGAGCCTTATAAAGTTGGTAAAAGGATGACTGATATCTTGCTAGAGATTTTGAATTTGAACAAGACAGAAGTGGTTTCAATTGATATTATCTCAAATCAAGAGTTCACAGAGGATGAGTGCAAGCGTCTCAGACAGAGCATGAAGTGTGGAATCATTAACCGTCTGACAGTGGGTGACCTCCAGGAGAGAGCCATGTCGCTTCAAGATGCCAGAGTCAAGGATTGGATGGAGACCGAGATAGTTCGACTGAGTCATCTTCGTGATCGAGCAAAAACCTACACCTTGTCAAGAAGCACAAGCTTTGGCAGGAGGACGAGGGAGCCAGTTTCTCCTGGAAAAGGAGGTTCGCATTTGAATGACTCCTGGAGTGGGACTAGAAACTTCTCTAACACGAATCGGGACATGAGCAGGAACTTGTCTGGCAAAGGCTTCTCTAATCAAGGGGATGATGCTATTGGTTCCGGTGAAATAATAAATGAAACTTCATGGGGTCATGGAAGAGAGAGAGATGTTAAAAAAACAAGCAAGTGGGACAAACAAGTTTCGCCTAGTTCAGAAATCACTGCTAGGAATGCCTTGTCTGGGGCCGCATCTGAGTCTTCTGCTGCTCACTCGGTAAATCCAGCAGCATCTTCATCCGTGGGGACTACACAGAATGCTGCTACAGTAAATGAATCCGAGAAGATATGGCGTTATCAGGATCCTTCTGGGAAAGTGCAGGGACCGTTTTCAATGGTGCAACTGCGCAAGTGGAGTAACACAGGTTATTTTCCTACAGACTTGAGAATATGGAGAATCTCAGACCAGCAAGAGGACTCCCTACTCTTGACCGATGTCTTAGCGGGAAAGATCTCGAAGGACACTCCATTGACAAGTAACAGTTTGCAAGTACACCCGAATTCTTCTCCATTTGTGGGCAGGCCTCAGGGAGGCACTTTGCAGTCAGGTGTGGATGGTCAGAATGCTAGTAGTTCAAATTCACATACTAATCCAACTTCTTATGATCAATCTTCTGGAGGAAGATGGAAATCTCAAAATGAAGTTAGCCCTAATGGTAGACCTGTCTCGGGTTCTATTAAAGTCCCTAGATATTCAGGAGACAGATGGTCTTCTGACCATGGCAATAAGAACTTCACTAATCTTCCTTCTCCTACTCCCAGCTCAGGAGGATCAAAGGAGCAGCCATTTCAAGTGGCTGCATCGTTCATGGAGGCGAAATCACTCTCAGGAACTGGTGGTGGTGGTTTGCATGGTTCTTCAGTAATGCAAGGGTCTGAAAATGACTCGCTGCGTTCACAATTGGGTCGGAATTTGTCAGAAAAGGGATTGGGTTCAGGTCCTATAACTGCACTCCAAAATCATCAATCTCAGCCAGTACGGCAATCACCTATCATTGATGATGCTTCGCTCAATCCAGCTGCAGATATTAGAAGCATTAGTGCAAATCTTCAGAGTTTGGTACAATCCATCAACAGTCGTAATCCTCCTATTGAAGCTCATGGACACGGGTCTGGCTCCATCCTGAAACGGGAAACAGATACTTCGGAGGCATGGCAAAATGCACACTCTCTCAAAGTTGAATCAAACGTTTCTTCTAGCATGCCACCAGCACAAACTCTTCACAGTCGTTGGGGGGAGATGTCGCCTGCACAAAATGCTGCCGTCACGTCATTCAGTGCAGGAAGTTCAACATCAAGTTTTTCCTCAGCCGGTATGTCCAGTTTTCCGTCTTCTGACCCTTGGCGATCTACAGCTCCTATTTCTAGTAACCCACAACACATTCAGTGTTCAACTCCACCCAATCTACCTTGGGGAATGGGTGCTCCAGAAGGTCAAAGTACTGTTCCACGACCGGGTTCAGAGTCTCAGAACCAAACTTGGGGGCCTATGCCATCAGGAAATCCAAACATGGGTTGGGGTCCAACAGGTCCACCTCCAAACGCCACTGCTATGATGTGGGGAGCTACTGCTCAAAGTTCTGGTCCTGCAGCTACAAACCCGGGTTGGATTGCACCAGGTCAAGGGCCGGCAGCTGGAAACAACCTTCAAGGATGGCCAGCGCACAGCCCTATGCCACCTCCGGTAAATGCAACTCCGGGATGGGTTGCTCCCAACGTTACACCAATGCCACCCATGAATATGAATCCCAGTTGGCTTGTTCCATCTGTGAATCAGAACATGTGGGGCAATGAGCATGGCAAAAATGGGAATAGATTCTCGAACCAAAAGGATGGTGGTTCTCATGGCGGAGATCCCGGGAATGGAGATAAATCTTGGGGTATGCAACCATCGTTTGGCGGTGGTGGTGGTGGGAATTCTAGGTCACCTTACAATAGAGTGCAAAAACTGTGCAAATATCATGAAAGTGGACATTGCAAGAAAGGAGGTACTTGTGATTACAGGCACAAGTAG 5223 45.2 MEAEEDDSSYQDQKSSSLYVDDAKLDVKCDTNREELHSNEQQHCVSKSSIIETEFSPNTVVESLPPRDAILGDEILAVDTCSEMEKKDLVEEREMAEEKDFRNIIQDMAEDSVKLEIEPGIAKAGLLEQRAFDDVKKNTGVTEEKALSEFAEGELLPGMVFVGVAENQVEGNVLMANFSEHTVVGGSVGCVETTETTCLRDVLAEETLAETTLFVQDVDVTDATNLVQKTELEEHADDANDLKDTEMPKQENFAVEKMELGVQVQLEEDSELKVSLVDGAVEGRTENLADRTGETLKMENASSTSNEVGLTHFAVEIKETVNIGNEEDKTTEMDGMCVEEKATDVGIMENLADETPEIKGVDVADYSIEELKIEDMEDREAGVQGLGLADESPVVEKLENVTDENAEAEGVQVTDYTAEEVKSENVENDKTAQGEEVAMGEEIAEPDDMVYLVDEGIGSEETDVNMTYLVEETEAAEEVEEMDVTEEVDEPNISSSGSKRKRGKNSKAPPRVASRKKVEEDVCFICFDGGDLVLCDRRGCPKAYHPACINRDEAFFRAKGRWNCGWHLCSNCEKTAHYMCYTCTFSLCKGCIKNAVILCVRGNKGFCETCMRFVTSIEKNEQGNTEKGQIDFNDKNSWEYLFKEYWTDLKGSLSLTFDELVHAKNPWKGSETLTSRPDSPGELCDGNVDGGSDLDVSENEESGSSKKRKAKKRSRSQAKEMSSPSMPAIASQGLSTDDNVEWGSKELLEFVMHMKNGDRTVLSQFDVQALLLEYIKRNKLRDPRRKSQIICDSRLESLFGKPRVGHFEMLKLLESHFLIKEDAQINDLHGSVAETESSQLEADGTDGSGKIKKEKKRRTRKKDERGLQSNLDDYAAIDIHNINLIYLKRNLVEYLIEDEESFHDKVVGSFVRIRISGSAQKQDLYRLVQVVGTSKASEPYKVGKRMTDILLEILNLNKTEVVSIDIISNQEFTEDECKRLRQSMKCGIINRLTVGDLQERAMSLQDARVKDWMETEIVRLSHLRDRAKTYTLSRSTSFGRRTREPVSPGKGGSHLNDSWSGTRNFSNTNRDMSRNLSGKGFSNQGDDAIGSGEIINETSWGHGRERDVKKTSKWDKQVSPSSEITARNALSGAASESSAAHSVNPAASSSVGTTQNAATVNESEKIWRYQDPSGKVQGPFSMVQLRKWSNTGYFPTDLRIWRISDQQEDSLLLTDVLAGKISKDTPLTSNSLQVHPNSSPFVGRPQGGTLQSGVDGQNASSSNSHTNPTSYDQSSGGRWKSQNEVSPNGRPVSGSIKVPRYSGDRWSSDHGNKNFTNLPSPTPSSGGSKEQPFQVAASFMEAKSLSGTGGGGLHGSSVMQGSENDSLRSQLGRNLSEKGLGSGPITALQNHQSQPVRQSPIIDDASLNPAADIRSISANLQSLVQSINSRNPPIEAHGHGSGSILKRETDTSEAWQNAHSLKVESNVSSSMPPAQTLHSRWGEMSPAQNAAVTSFSAGSSTSSFSSAGMSSFPSSDPWRSTAPISSNPQHIQCSTPPNLPWGMGAPEGQSTVPRPGSESQNQTWGPMPSGNPNMGWGPTGPPPNATAMMWGATAQSSGPAATNPGWIAPGQGPAAGNNLQGWPAHSPMPPPVNATPGWVAPNVTPMPPMNMNPSWLVPSVNQNMWGNEHGKNGNRFSNQKDGGSHGGDPGNGDKSWGMQPSFGGGGGGNSRSPYNRVQKLCKYHESGHCKKGGTCDYRHK* 1741
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5514003 5527703 + Chy1G007470.1 Chy01g00747 217928

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy01g00747 1740 MobiDBLite consensus disorder prediction 668 736 - -
Chy01g00747 1740 MobiDBLite consensus disorder prediction 1224 1332 - -
Chy01g00747 1740 MobiDBLite consensus disorder prediction 1665 1681 - -
Chy01g00747 1740 MobiDBLite consensus disorder prediction 1117 1157 - -
Chy01g00747 1740 MobiDBLite consensus disorder prediction 1053 1084 - -
Chy01g00747 1740 Gene3D SWIB/MDM2 domain 731 826 IPR036885 -
Chy01g00747 1740 SUPERFAMILY Plus3-like 877 1007 IPR036128 GO:0003677
Chy01g00747 1740 SUPERFAMILY SWIB/MDM2 domain 740 818 IPR036885 -
Chy01g00747 1740 CDD SWIB-MDM2_like 742 817 - -
Chy01g00747 1740 CDD GYF 1164 1219 IPR003169 GO:0005515
Chy01g00747 1740 MobiDBLite consensus disorder prediction 719 736 - -
Chy01g00747 1740 SUPERFAMILY FYVE/PHD zinc finger 510 567 IPR011011 -
Chy01g00747 1740 SMART rtf1 876 986 IPR004343 GO:0003677
Chy01g00747 1740 MobiDBLite consensus disorder prediction 834 865 - -
Chy01g00747 1740 MobiDBLite consensus disorder prediction 1383 1398 - -
Chy01g00747 1740 CDD Bbox1 568 593 - -
Chy01g00747 1740 MobiDBLite consensus disorder prediction 1552 1569 - -
Chy01g00747 1740 ProSiteProfiles Zinc finger C3H1-type profile. 1715 1740 IPR000571 GO:0046872
Chy01g00747 1740 SMART PHD_3 522 568 IPR001965 -
Chy01g00747 1740 SMART swib_2 744 822 IPR019835 -
Chy01g00747 1740 MobiDBLite consensus disorder prediction 1497 1586 - -
Chy01g00747 1740 CDD PHD5_NSD 522 567 - -
Chy01g00747 1740 MobiDBLite consensus disorder prediction 475 513 - -
Chy01g00747 1740 Gene3D - 877 1007 IPR036128 GO:0003677
Chy01g00747 1740 MobiDBLite consensus disorder prediction 1350 1376 - -
Chy01g00747 1740 MobiDBLite consensus disorder prediction 1224 1290 - -
Chy01g00747 1740 MobiDBLite consensus disorder prediction 1497 1536 - -
Chy01g00747 1740 MobiDBLite consensus disorder prediction 1308 1332 - -
Chy01g00747 1740 ProSiteProfiles Plus3 domain profile. 876 1009 IPR004343 GO:0003677
Chy01g00747 1740 Pfam GYF domain 1167 1207 IPR003169 GO:0005515
Chy01g00747 1740 MobiDBLite consensus disorder prediction 1346 1398 - -
Chy01g00747 1740 SUPERFAMILY GYF domain 1155 1217 IPR035445 -
Chy01g00747 1740 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 511 614 IPR013083 -
Chy01g00747 1740 Pfam SWIB/MDM2 domain 744 817 IPR003121 -
Chy01g00747 1740 ProSitePatterns Zinc finger PHD-type signature. 523 583 IPR019786 -
Chy01g00747 1740 MobiDBLite consensus disorder prediction 1099 1116 - -
Chy01g00747 1740 Pfam Plus-3 domain 881 985 IPR004343 GO:0003677
Chy01g00747 1740 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44-RELATED 472 1028 - -
Chy01g00747 1740 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44-RELATED 1029 1739 - -
Chy01g00747 1740 ProSiteProfiles GYF domain profile. 1164 1218 IPR003169 GO:0005515
Chy01g00747 1740 MobiDBLite consensus disorder prediction 1665 1714 - -
Chy01g00747 1740 MobiDBLite consensus disorder prediction 1429 1455 - -
Chy01g00747 1740 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 20 472 1028 - -
Chy01g00747 1740 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 20 1029 1739 - -
Chy01g00747 1740 MobiDBLite consensus disorder prediction 1034 1157 - -
Chy01g00747 1740 ProSiteProfiles Zinc finger PHD-type profile. 520 586 IPR019787 -
Chy01g00747 1740 Gene3D - 1166 1222 IPR035445 -
Chy01g00747 1740 ProSiteProfiles SWIB/MDM2 domain profile. 736 819 IPR003121 -
Chy01g00747 1740 SMART gyf_5 1165 1220 IPR003169 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy01g00747 - - - csv:101218325 3165.17
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g00747 Chy-Chr1:5514003 Chy07g01268 Chy-Chr7:17408028 3.60E-160 dispersed
Chy01g00747 Chy-Chr1:5514003 Chy11g01964 Chy-Chr11:25637866 4.65E-08 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g38 . . . . . . . . Cmo19g00701 . . . . . Sed05g2290 Cpe04g00103 Cpe15g00561 Bhi05g01262 Tan02g0757 Cmetu01g2730 . . . . Cla02g00488 Cam02g0497 Cec02g0498 Cco02g0503 Clacu02g0501 Cmu02g0496 Cre02g0829 Cone12ag1185 Cone8ag1230 . . . Csa07g00034 . Cme01g01347 Blo04g00538 . . . Bpe15g00843 . . . . . . . . . Car19g00533 . . . . . . . . . Cla02g01127 Cam02g1202 Cec02g1205 Cco02g1255 Clacu02g1191 Cmu02g1153 Cre02g1463 . . Chy01g00747 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007589 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17291 PF03126 Plus-3 1.40E-24 No_clan Chy TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy01g00747 Chy_Chr01 FPKM 10.584054 11.962007 11.359109 10.42681 19.863586 18.350292 20.185301 16.463787 15.922363 17.642927