Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy01g00756 ATGGCCTCCGATTCTTCTCCAGTTAACTTCAACACAGGTCCTTCCTCGCCTGATGATTCATTCTCTAGTCCCATCGGAAACACCGTCTCTTCCTCTGGCGACGGTTATCGCCGTCGAAGCCGTCGCCGGTCATCTACTCCTTCGGAAATGGCTACGCCGCCGCGTCAACGGCCCCGATTGGTCTCGTCGGAAACCACCCCGACTGCTAAGGAGCCGCGCTCTCGCCGGCGAGGCGGTGGGCGGAGGGCGTCTGGTAGTGACGTGCCTCCGGTGGCTGCTACACCTTCTTCGACGGATGATATTCCGCCATCGACGGAACCTGGCGACGGCGATGACATGGATGAGGATCATCCGACCTTTGTATGGGGGACGAATATAAGTGTTGATGATGTAAAGGGAGCTATCATACGGTTTTTGAGGCATTTCCGTGATCGTCAGGCGTCGCAGTCCGAGGGGGATTTTCATACTGAGGGAAAATACGCTGAGGTAATCAAGAGGGTTCTTGAAAATGAAGGGGATTCGCTTGATGTGGACGCGCAGGATTTGTTCAATTACGATGCGGATTTATATACGAAGATGGTGAGGTACCCTCTTGAGGTTCTTGCAATATTTGATATTGTTCTGATGGAAATGGTGCCCCAAATCAACCCATTGTTTGAAAAGCACATTCAAACTCGGATATTCAATCTCAGAACTTCTACTTCAATGAGAAATCTGAACCCATCTGACATTGAGAGGATGGTGTCACTGAAGGGGATGATTATACGGTGTAGTTCAATAATTCCCGAGATCAGGGAGGCAATATTTAGATGTCTGGTATGCGGATACTACACTGACCCGGTATCTATTGAAAGAGGACAAATAACTGAGCCCACTATATGCTTGAAGGAAGAGTGCCAAGCAAGGAATTCCATGACATTGGTTCATAATCGATGCAGGTTTGCTGATAAGCAGATTGTGCGGCTTCAGGAGACTCCTGATGAGATACCTGAAGGAGGGACGCCTCATACCGTAAGCTTGTTAATGCATGACAAGCTGGTTGATACTGGAAAGCCTGGTGACAGAGTTGAGGTCACTGGGATTTACAGGGCCATGAGTGTGAGAGTTGGGCCAACCCAGAGAACTGTGAAGTCATTGTTCAAGACATATATTGACTGTCTTCATATAAAGAAGACTGATAAGTCAAGAATGGTGGCAGATCTGACTGAAGCTGAAAACCGGTTGAGTGGAAATGTGGATGATCTGTCATTTGATGAAGAGAAGGTGGAAGAGTTGAAAGAACTCTCCAAAAAGCCTGATATATATGACAGACTGACCAGGTCTTTGGCTCCTAATATTTGGGAGCTTGATGATGTAAAGAAGGGCCTTCTTTGCCAGCTCTTTGGTGGGAATGCTTTGAAATTGGCATCCGGTGCAAGCTTTCGTGGAGATATTAACATACTTCTTGTTGGTGATCCTGGAACCAGCAAGTCTCAGCTTCTCCAATATATACATAAACTATCTCCCCGTGGCATTTACACCAGTGGAAGGGGTAGCTCTGCTGTTGGTTTGACAGCTTATGTCTCCAAAGATCCTGAAACAGGCGAAACAGTACTGGAGAGTGGAGCCTTGGTTTTGAGTGACAGAGGCATTTGCTGCATTGATGAATTTGATAAAATGTCTGAAAATGCAAGGAGCATGTTGCACGAGGTGATGGAGCAACAAACTGTTTCAATAGCAAAGGCTGGGATTATTGCTTCTCTTAATGCCAGGACTTCAGTATTAGCTTGTGCAAATCCTAGTGGTTCACGTTATAATCCTCGCTTATCTGTAATTGATAACATACACCTTCCTCCTACTTTGTTATCAAGGTTTGACTTGATTTATCTAATTTTGGATAAAGCTGATGAGCAAACAGATAGGCGCTTAGCTAAGCATATTGTCTCACTGCACTTTGACAACCCTGAGGGCATTGAGCAGAATTTCTTGGATCTTCATACCTTGACTTCATATGTCAGCTATGCTAGGAAAAACATTCACCCAAAATTGTCAGACGAGGCAGCTGAAGAGTTGACTAGAGGCTATGTTGAGCTGAGGAGAAGAGGAAACTTTCCAGGCAGTAGTAAAAAGGTCATTACAGCAACCCCCAGACAGATTGAGAGTTTAATACGTCTAAGCGAAGCCCTTGCTCGAATACGTTTCTCAGAATGGGTTGAAAAGGGTGATGTTCTCGAATCATTCCGGCTTCTAGAAGTTGCGATGCAACAATCTGCAACAGATCATTCTACAGGAACTATTGACATGGATTTGATCACCACGGGAGTATCGAGCAGCGAAAGGATACGAAGGGAGAGTTTATTAGCTGCAACTCGCAACATTATTATGGAGAAAATGCAGCTTGGAGGACCCTCCATGCGCTTGTCAGAGTTGTTGGATGAGCTGAAGAAGAAGAATCCTGAAAATGAAGTCCATCTCAACAACGTATAG 2466 45.7 MASDSSPVNFNTGPSSPDDSFSSPIGNTVSSSGDGYRRRSRRRSSTPSEMATPPRQRPRLVSSETTPTAKEPRSRRRGGGRRASGSDVPPVAATPSSTDDIPPSTEPGDGDDMDEDHPTFVWGTNISVDDVKGAIIRFLRHFRDRQASQSEGDFHTEGKYAEVIKRVLENEGDSLDVDAQDLFNYDADLYTKMVRYPLEVLAIFDIVLMEMVPQINPLFEKHIQTRIFNLRTSTSMRNLNPSDIERMVSLKGMIIRCSSIIPEIREAIFRCLVCGYYTDPVSIERGQITEPTICLKEECQARNSMTLVHNRCRFADKQIVRLQETPDEIPEGGTPHTVSLLMHDKLVDTGKPGDRVEVTGIYRAMSVRVGPTQRTVKSLFKTYIDCLHIKKTDKSRMVADLTEAENRLSGNVDDLSFDEEKVEELKELSKKPDIYDRLTRSLAPNIWELDDVKKGLLCQLFGGNALKLASGASFRGDINILLVGDPGTSKSQLLQYIHKLSPRGIYTSGRGSSAVGLTAYVSKDPETGETVLESGALVLSDRGICCIDEFDKMSENARSMLHEVMEQQTVSIAKAGIIASLNARTSVLACANPSGSRYNPRLSVIDNIHLPPTLLSRFDLIYLILDKADEQTDRRLAKHIVSLHFDNPEGIEQNFLDLHTLTSYVSYARKNIHPKLSDEAAEELTRGYVELRRRGNFPGSSKKVITATPRQIESLIRLSEALARIRFSEWVEKGDVLESFRLLEVAMQQSATDHSTGTIDMDLITTGVSSSERIRRESLLAATRNIIMEKMQLGGPSMRLSELLDELKKKNPENEVHLNNV* 822
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5647357 5652165 + Chy1G007560.1 Chy01g00756 217937

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy01g00756 821 Pfam MCM N-terminal domain 134 232 IPR027925 -
Chy01g00756 821 MobiDBLite consensus disorder prediction 1 121 - -
Chy01g00756 821 Gene3D - 412 752 IPR027417 -
Chy01g00756 821 Gene3D - 263 315 - -
Chy01g00756 821 MobiDBLite consensus disorder prediction 46 68 - -
Chy01g00756 821 Pfam MCM OB domain 236 365 IPR033762 -
Chy01g00756 821 Gene3D - 236 375 IPR012340 -
Chy01g00756 821 Gene3D - 753 817 IPR036388 -
Chy01g00756 821 ProSitePatterns MCM family signature. 543 551 IPR018525 GO:0003677|GO:0005524|GO:0006260
Chy01g00756 821 ProSiteProfiles MCM family domain profile. 434 640 IPR001208 GO:0003677|GO:0005524|GO:0032508
Chy01g00756 821 Gene3D - 125 231 - -
Chy01g00756 821 PRINTS Mini-chromosome maintenance (MCM) protein 4 signature 258 271 IPR008047 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Chy01g00756 821 PRINTS Mini-chromosome maintenance (MCM) protein 4 signature 309 321 IPR008047 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Chy01g00756 821 PRINTS Mini-chromosome maintenance (MCM) protein 4 signature 450 461 IPR008047 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Chy01g00756 821 PRINTS Mini-chromosome maintenance (MCM) protein 4 signature 596 613 IPR008047 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Chy01g00756 821 PRINTS Mini-chromosome maintenance (MCM) protein 4 signature 748 757 IPR008047 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Chy01g00756 821 SMART mcm 232 748 IPR031327 GO:0003677|GO:0005524|GO:0032508
Chy01g00756 821 PRINTS Mini-chromosome maintenance (MCM) protein family signature 475 490 IPR001208 GO:0003677|GO:0005524|GO:0032508
Chy01g00756 821 PRINTS Mini-chromosome maintenance (MCM) protein family signature 563 576 IPR001208 GO:0003677|GO:0005524|GO:0032508
Chy01g00756 821 PRINTS Mini-chromosome maintenance (MCM) protein family signature 614 622 IPR001208 GO:0003677|GO:0005524|GO:0032508
Chy01g00756 821 PRINTS Mini-chromosome maintenance (MCM) protein family signature 535 549 IPR001208 GO:0003677|GO:0005524|GO:0032508
Chy01g00756 821 PRINTS Mini-chromosome maintenance (MCM) protein family signature 587 599 IPR001208 GO:0003677|GO:0005524|GO:0032508
Chy01g00756 821 SUPERFAMILY Nucleic acid-binding proteins 152 386 IPR012340 -
Chy01g00756 821 PANTHER DNA REPLICATION LICENSING FACTOR MCM4 92 807 IPR008047 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Chy01g00756 821 CDD MCM4 437 746 - -
Chy01g00756 821 Pfam MCM P-loop domain 422 644 IPR001208 GO:0003677|GO:0005524|GO:0032508
Chy01g00756 821 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 92 807 IPR031327 GO:0003677|GO:0005524|GO:0032508
Chy01g00756 821 Pfam MCM AAA-lid domain 660 746 IPR041562 -
Chy01g00756 821 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 445 760 IPR027417 -
Chy01g00756 821 MobiDBLite consensus disorder prediction 1 34 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy01g00756 K02212 MCM4, CDC54; DNA replication licensing factor MCM4 [EC:5.6.2.3] - csv:101211850 1560.43
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g00756 Chy-Chr1:5647357 Chy02g00002 Chy-Chr2:43817 8.57E-119 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g15 . . . . . . . . Cmo19g00696 . . . . . . Cpe04g00111 Cpe15g00556 . . . . . . . Cla02g00495 Cam02g0506 Cec02g0506 Cco02g0511 Clacu02g0508 Cmu02g0504 Cre02g0837 . . Cone3ag1220 . . Csa07g00021 . Cme01g01361 . . . . . . . . . . . . Cma19g00684 . Car19g00528 . . . . . . . . . . . . . . . . Lsi11g01129 . Chy01g00756 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy04g00760 . 107 798 Core DNA Replication Machinery Family AT4G14700 66.0 1.6e-267 919.1
Chy02g00078 . 1 376 Core DNA Replication Machinery Family AT4G14700 69.2 8.0e-155 544.7
Chy02g00080 . 83 223 Core DNA Replication Machinery Family AT4G14700 64.4 3.8e-48 190.3
Chy04g00760 . 107 798 Core DNA Replication Machinery Family AT4G12620 67.9 7.0e-276 946.8
Chy02g00078 . 1 376 Core DNA Replication Machinery Family AT4G12620 69.5 2.3e-154 543.1
Chy02g00080 . 83 223 Core DNA Replication Machinery Family AT4G12620 66.7 9.8e-52 202.2
Chy03g01522 . 2 360 Core DNA Replication Machinery Family AT2G37560 65.5 1.1e-140 496.5
Chy10g00355 . 9 413 Core DNA Replication Machinery Family AT2G01120 64.6 1.8e-153 539.3
Chy11g01648 . 3 524 Core DNA Replication Machinery Family AT4G29910 58.2 8.9e-169 590.5
Chy05g00660 . 1 254 Core DNA Replication Machinery Family AT1G26840 66.5 2.4e-90 328.9
Chy01g00870 . 34 829 Core DNA Replication Machinery Family AT1G79150 57.8 2.5e-244 842.0
Chy04g01347 . 10 939 Core DNA Replication Machinery Family AT1G44900 75.5 0.0e+00 1347.0
Chy02g00156 . 1 575 Core DNA Replication Machinery Family AT5G46280 80.7 1.1e-267 919.1
Chy01g00756 . 1 821 Core DNA Replication Machinery Family AT2G16440 76.8 0.0e+00 1120.9
Chy05g01255 . 1 717 Core DNA Replication Machinery Family AT2G07690 77.8 0.0e+00 1078.2
Chy02g00002 . 7 840 Core DNA Replication Machinery Family AT5G44635 72.0 0.0e+00 1190.3
Chy01g01752 . 4 722 Core DNA Replication Machinery Family AT4G02060 85.1 0.0e+00 1218.4
Chy11g01344 . 38 500 Core DNA Replication Machinery Family AT2G29680 60.9 1.2e-159 560.1
Chy11g01344 . 22 465 Core DNA Replication Machinery Family AT1G07270 58.2 1.5e-140 496.5
Chy01g01391 . 1 594 Core DNA Replication Machinery Family AT3G25100 76.4 4.1e-257 884.0
Chy04g02091 . 12 783 Core DNA Replication Machinery Family AT3G09660 72.6 0.0e+00 1085.5
Chy01g00231 . 10 642 Core DNA Replication Machinery Family AT2G14050 77.8 2.7e-286 981.1
Chy11g00257 . 18 420 Core DNA Replication Machinery Family AT2G20980 55.8 8.0e-116 414.1
Chy06g01182 . 7 192 Core DNA Replication Machinery Family AT1G77320 66.7 3.6e-72 270.4
Chy01g02007 . 1 196 Core DNA Replication Machinery Family AT1G80190 66.5 3.6e-72 268.1
Chy07g00809 . 743 887 Core DNA Replication Machinery Family AT3G12530 71.7 1.8e-60 228.8
Chy03g00186 . 22 191 Core DNA Replication Machinery Family AT1G19080 67.6 1.1e-62 236.5
Chy03g00186 . 22 191 Core DNA Replication Machinery Family AT3G55490 67.6 1.1e-62 236.5
Chy06g00159 . 2 164 Core DNA Replication Machinery Family AT5G49010 61.3 3.1e-49 191.8
Chy11g00218 . 1 1546 Core DNA Replication Machinery Family AT5G67100 60.0 0.0e+00 1748.0
Chy12g01485 . 81 704 Core DNA Replication Machinery Family AT1G67630 61.7 4.3e-217 751.1
Chy11g01796 . 8 447 Core DNA Replication Machinery Family AT1G67320 64.9 1.9e-183 639.0
Chy09g00091 . 7 469 Core DNA Replication Machinery Family AT5G41880 61.1 1.5e-166 582.8
Chy08g00986 . 1 1000 Core DNA Replication Machinery Family AT5G63960 80.7 0.0e+00 1652.1
Chy04g01776 . 41 282 Core DNA Replication Machinery Family AT2G42120 78.9 1.6e-117 419.9
Chy11g01796 . 8 447 Core DNA Replication Machinery Family AT1G67320 64.9 1.9e-183 639.0
Chy11g00894 . 1 2096 Core DNA Replication Machinery Family AT1G08260 71.3 0.0e+00 2984.5
Chy11g00894 . 25 2203 Core DNA Replication Machinery Family AT2G27120 67.8 0.0e+00 2949.5
Chy12g01602 . 1 258 Core DNA Replication Machinery Family AT5G22110 76.4 9.7e-119 424.1
Chy05g00194 . 1 921 Core DNA Replication Machinery Family AT5G22010 63.5 1.3e-307 1052.4
Chy06g01971 . 1 332 Core DNA Replication Machinery Family AT1G63160 90.7 6.0e-173 603.6
Chy08g00054 . 1 355 Core DNA Replication Machinery Family AT5G27740 84.8 8.6e-178 619.8
Chy07g00561 . 1 334 Core DNA Replication Machinery Family AT1G21690 81.8 2.4e-153 538.5
Chy03g00774 . 6 220 Core DNA Replication Machinery Family AT1G77470 76.2 1.8e-93 339.7
Chy03g00775 . 1 216 Core DNA Replication Machinery Family AT1G77470 78.3 3.5e-89 325.5
Chy05g01462 . 26 618 Core DNA Replication Machinery Family AT2G06510 67.7 6.6e-250 860.1
Chy06g02198 . 28 701 Core DNA Replication Machinery Family AT2G06510 51.3 1.6e-200 696.0
Chy02g02440 . 1 623 Core DNA Replication Machinery Family AT5G08020 67.6 3.7e-245 844.3
Chy06g02198 . 6 810 Core DNA Replication Machinery Family AT5G45400 53.1 9.1e-234 807.0
Chy02g02440 . 1 618 Core DNA Replication Machinery Family AT5G61000 65.9 6.3e-240 827.0
Chy06g02198 . 1 796 Core DNA Replication Machinery Family AT4G19130 54.2 5.6e-230 794.3
Chy08g01078 . 1 373 Core DNA Replication Machinery Family AT5G26680 85.6 1.4e-182 636.0
Chy06g00300 . 1 1095 Core DNA Replication Machinery Family AT1G08840 52.9 2.9e-298 1021.5
Chy11g00843 . 2 759 Core DNA Replication Machinery Family AT1G08130 69.2 5.4e-297 1016.9
Chy11g00843 . 158 759 Core DNA Replication Machinery Family AT1G49250 69.3 4.9e-243 837.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007588 1 2 1 1 1 1 3 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy01g00756 Chy_Chr01 FPKM 21.896826 21.115221 38.186176 35.924862 94.173286 87.186531 93.650101 19.6502 20.360008 21.375479