Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy01g00760 ATGGTAGTGGAATCAGACTTCTATGAGCTCATCTTTTCTTTATCTTATGGTGGGTTGGATTTGTCTAAGTTTGAGGACTTCGTGGCAGAGATTAGGCCCCTGGTCTCCCTTTTGATGGCCAAACCCAAGGCTCCCAGGCAAACCCTAGATTCTTACACTGTCAAGCGCATCAACAAAACCATTAAAGCCGGCGATTGCGTGCTTATGAGGCCCTCTGAACCTTCGAAGCCGTCGTATGTTGCTAAGATTGAAAAGATTGAGGCTGATTCTCGTGGGGCCAATGTGAAGGTCCATGTTCGCTGGTATTACCGGCCGGAGGAATCAATTGGTGGTCGGAGACAGTTTCATGGCTCGAAGGAGCTCTTTCTTTCCGACCATTTTGACGTTCAAAGCGCCGATACCATCGAGGGAAAGTGTACGGTCCATACGTTTAAGAATTATACCAAGCTTGATGCTGTTGGAAATGATGATTATTTTTGCCGTTTCGACTATAATTCCACTACTGGAGCTTTCAATCCCGATCGAGTAGCTGTGTATTGCAAGTGTGAGATGCCTTATAATCCCGATGACCTAATGGTTCAGTGCGAGAACTGCAGTGATTGGTTTCATCCTGCTTGTATAGAAATGACTGCAGAAGAAGCTAAAAAGCTTGACCACTTTTACTGTGAGAGTTGTTCTTCAGAGGGTCAAAAGAAGTTGCAGAATTCACAGTCTACATCTAAAGTTGCAGAGACAAAGGTGGATACAAAACGACGCCGGAGGTGA 765 45.36 MVVESDFYELIFSLSYGGLDLSKFEDFVAEIRPLVSLLMAKPKAPRQTLDSYTVKRINKTIKAGDCVLMRPSEPSKPSYVAKIEKIEADSRGANVKVHVRWYYRPEESIGGRRQFHGSKELFLSDHFDVQSADTIEGKCTVHTFKNYTKLDAVGNDDYFCRFDYNSTTGAFNPDRVAVYCKCEMPYNPDDLMVQCENCSDWFHPACIEMTAEEAKKLDHFYCESCSSEGQKKLQNSQSTSKVAETKVDTKRRRR* 255
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5677548 5683096 - Chy1G007600.1 Chy01g00760 217941

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy01g00760 254 ProSitePatterns Zinc finger PHD-type signature. 180 225 IPR019786 -
Chy01g00760 254 ProSiteProfiles Zinc finger PHD-type profile. 177 228 IPR019787 -
Chy01g00760 254 CDD BAH_BAHCC1 60 195 - -
Chy01g00760 254 Pfam PHD-finger 179 227 IPR019787 -
Chy01g00760 254 SUPERFAMILY FYVE/PHD zinc finger 169 231 IPR011011 -
Chy01g00760 254 MobiDBLite consensus disorder prediction 228 243 - -
Chy01g00760 254 SMART PHD_3 179 226 IPR001965 -
Chy01g00760 254 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 174 241 IPR013083 -
Chy01g00760 254 PANTHER OS08G0421900 PROTEIN 39 254 - -
Chy01g00760 254 ProSiteProfiles BAH domain profile. 59 175 IPR001025 GO:0003682
Chy01g00760 254 SMART BAH_4 59 175 IPR001025 GO:0003682
Chy01g00760 254 MobiDBLite consensus disorder prediction 228 254 - -
Chy01g00760 254 Pfam BAH domain 60 174 IPR001025 GO:0003682
Chy01g00760 254 PANTHER CHROMATIN REMODELING PROTEIN SHL 39 254 IPR045205 GO:0006325|GO:0035064
Chy01g00760 254 Gene3D - 37 173 IPR043151 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy01g00760 - - - csv:101211114 454.907
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g00760 Chy-Chr1:5677548 Chy12g00529 Chy-Chr12:7368197 7.40E-107 dispersed
Chy01g00760 Chy-Chr1:5677548 Chy10g00423 Chy-Chr10:10085746 8.19E-06 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g8 . . . . . Bpe12g00087 . . Cmo19g00694 . . . . . Sed05g2305 Cpe04g00115 Cpe15g00553 Bhi05g01787 Tan02g0774 Cmetu01g1478 . Hepe02g0245 . . Cla02g00500 Cam02g0510 Cec02g0510 Cco02g0517 Clacu02g0512 Cmu02g0508 Cre02g0841 Cone12ag1172 Cone8ag1219 . . . Csa07g00017 . Cme01g01365 Blo04g00526 Blo13g00542 Bda15g01076 Bda14g00569 Bpe15g00854 . Bma03g00563 Bma08g00787 . . . . . . Car19g00525 . . . . . . . . . . . . . . . . Lsi11g01125 . Chy01g00760 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000538 4 7 4 5 4 2 5 3 2 2 2 2 4 3 2 4 2 4 5 2 2 3 3 3 3 3 3 10 9 2 109
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17292 PF01426 BAH 4.70E-22 No_clan Chy TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy01g00760 Chy_Chr01 FPKM 8.248904 8.4703 2.484813 2.548871 52.036671 54.609779 51.441681 2.103944 1.853451 1.559789