Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy01g00763 ATGGGATCTGTGTGTTGTGTTGCGGCAAGAGACAAGACTGTTGGGGTTGGTTCTGGTAGTGAAACGCAGCATAGGAATGTTCGTCACTCGCCAAGTTGGAGCTTTCGGTGGGATCATCCTGGGCGTGTGGTTGGTGAGGAAGTTTCCCTGAATTCGGTTTCAGATGGAGTAAGTAGAAATGATAGGCCAGAGTTCAAATATGAATCCTCATATGCTTCAGAAGAGGGTAGTCCATTGGAACATTATCGTAGACAGACATGGAAAAACTCCTCAGTTTCTGAAGGAAGCACGACGAATGTGAGGACTCCTACATCAGGTCATTCAATTTCAAGAAATGTTTCCACGGATGTTAGTTTGGAACAGGTGAAGAAAGCCACAGAATGTGCAACAGCTTCTACATCTCCTGCAAAAGTATCCCTTTCAATCCCTTCAACTTCATCTTTGTCAACATCCCCTCTATCAACCCACAGTCACATTCCTTCCACCGGTCTGACCTCATCGAGATTGTCTCACTGTTCTCCCGGGCATCGATTGTTACGTCAAGTATCTTGCAATCGCATCCCAGCATACAAGTCACCAAGTAGCTACACAGTTTCAGAGGACAGGCGTGCAATCCCTGGGAGCATTGATTCATTACGGGGATCACATGGTGGGTCTTCTGATGGTTGGTCTATGAATGCTTTCTCTGAGCTCATGGCAACTTCTCATAGGGGAAGATGGTCCTTTGGTAGTGAATCCTTTGACTTTGCTCGTGAGAAGATGGTTAGATCCTGCAGCCTATTCTCGCCTTCACCTTCTGCTGATTCGCAAACTTGCGGAATTTGCTCAATGTTGTTGGTGGAGAGATCTTTATGGACCAGCCAAAAGATAATTGCTAACAATGAACTGTCTGTTGTTGCTGTACTAACATGTGGACATGTTTATCATGCTGAGTGTTTGGAGAGTATGACTCCTGAAATTAGCAAGTATGATCCAGCCTGCCCAATATGTTCATTTGGTGAAAAGCAGACACTAAGGATGTCTGAAAAGGCACTTAGAGGTGAATTAGAGTCGAAAATTAGAAATAAGAGGTTAAGGAATCGCATTGCTGATAGCGGTCTTGACAGCGAATCTGCCATGCTTGATCATTTTATAAATACTGGACAACAAGGGAAGTGTCCTAAGTTGTCTTCTAGCTCCAGTTTGAGGAGTTCCTCAGGGAGGGGTTTCTTGAGGCGTCACTTCTCCTTTGGCTCAAAGGGAGGGACCAAAGCCCTGCCAGAAAGTAACAACACAGCGAAGAGAAAAGGATTTTTATGGTCAAGATCTACTAAGATGTGA 1320 44.85 MGSVCCVAARDKTVGVGSGSETQHRNVRHSPSWSFRWDHPGRVVGEEVSLNSVSDGVSRNDRPEFKYESSYASEEGSPLEHYRRQTWKNSSVSEGSTTNVRTPTSGHSISRNVSTDVSLEQVKKATECATASTSPAKVSLSIPSTSSLSTSPLSTHSHIPSTGLTSSRLSHCSPGHRLLRQVSCNRIPAYKSPSSYTVSEDRRAIPGSIDSLRGSHGGSSDGWSMNAFSELMATSHRGRWSFGSESFDFAREKMVRSCSLFSPSPSADSQTCGICSMLLVERSLWTSQKIIANNELSVVAVLTCGHVYHAECLESMTPEISKYDPACPICSFGEKQTLRMSEKALRGELESKIRNKRLRNRIADSGLDSESAMLDHFINTGQQGKCPKLSSSSSLRSSSGRGFLRRHFSFGSKGGTKALPESNNTAKRKGFLWSRSTKM* 440
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5722543 5724440 - Chy1G007630.1 Chy01g00763 217944

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy01g00763 439 SUPERFAMILY RING/U-box 266 332 - -
Chy01g00763 439 MobiDBLite consensus disorder prediction 68 115 - -
Chy01g00763 439 PANTHER BNAA09G43140D PROTEIN 1 431 - -
Chy01g00763 439 SMART ring_2 272 330 IPR001841 -
Chy01g00763 439 MobiDBLite consensus disorder prediction 83 115 - -
Chy01g00763 439 MobiDBLite consensus disorder prediction 416 439 - -
Chy01g00763 439 MobiDBLite consensus disorder prediction 414 439 - -
Chy01g00763 439 PANTHER EXPRESSED PROTEIN 1 431 - -
Chy01g00763 439 MobiDBLite consensus disorder prediction 128 168 - -
Chy01g00763 439 ProSiteProfiles Zinc finger RING-type profile. 272 331 IPR001841 -
Chy01g00763 439 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 252 332 IPR013083 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy01g00763 - - - csv:101210626 832.787
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g00763 Chy-Chr1:5722543 Chy02g02060 Chy-Chr2:24824509 2.71E-12 dispersed
Chy01g01927 Chy-Chr1:24493352 Chy01g00763 Chy-Chr1:5722543 2.67E-06 transposed
Chy10g01015 Chy-Chr10:15530901 Chy01g00763 Chy-Chr1:5722543 6.45E-19 transposed
Chy01g00763 Chy-Chr1:5722543 Chy11g00356 Chy-Chr11:3255038 1.20E-172 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g1 . . . . Bpe07g00526 . . . . . Cma02g00375 Cma20g00824 Car02g00242 Car20g00710 . Cpe04g00116 . . . . . . . . Cla02g00501 Cam02g0511 Cec02g0511 Cco02g0519 Clacu02g0513 Cmu02g0509 Cre02g0842 . . . . . . . Cme01g01368 . . . . . . . . Sed01g0278 Cmo02g00382 Cmo20g00835 . . . . . . Bhi10g01967 Tan05g1260 Cmetu11g0821 . . . . . . . . . . . . . Chy01g00763 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001394 4 6 2 3 3 2 3 2 2 2 2 2 2 2 2 1 2 2 3 2 2 2 2 2 2 2 2 5 5 1 74
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy01g00763 Chy_Chr01 FPKM 83.192924 89.013466 81.708748 76.737228 132.379227 140.175613 138.801987 145.029373 142.89415 139.223892