Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy01g00796 ATGGAGGACAAGCGTCGCGACACCGCCAATATACCTTCCAATACTACCGATTCTCCCTCATCGGAGCCGCCTTCTTCTCGCCGTCGTGCTGGAGCTCACAAGCGAAAGGCTAGCGCTCTCGGTGCCTCTAACACCTTATCTGCTCCCTCCAAACGTGTTACTCGCGACAAATCTGCGCTTTCCCATCCTCCAAATCATAACGGCCCCTTCACCCGAGCTCGACTTGGCCCTAACAATGTCGCTGGAGCAGCATCGGTTCACGCGGCTGGAGGTCTTGCTCCCGGATCAGTTAAGGCGGACGGCTCTTTACTTCATTCCGAAGTTCAGCGTGGAGATGCGTTACTTTCTGCGGCGGAGGAATTGAACAAGGCGACTAGATTGGCGAATTTGGAGGCGTCTTTTGAAGTTGATTACGAAGCTATTAAATCTCGAGGTGCAAATGTTCATGTTGTTCCGAATCATTGTGGTTGGTTTTCATGGACAAAAGTCCACCCAATTGAGGAACGTTCATTGTCTACTTTTTTCAGTGGAAAGGCTGCCAATCGAAGTCCAGATATTTATATTGAGATACGTAATTGGATTATGAAAAAATTCCATGCAAATCCTAGTACACAGATTGAATCAAAAGATTTATCCGAACTGGAAGTTGGAGAACTAGATGCTAGGCAGGAGGTGATGGAGTTTCTAGACCATTGGGGTTTGATTAATTTTCACCCTTTCCCAGCCACAGATTCAATTTCAACAAATGATGTTAATGATGAAAATCAAAAGGATTCTCTGATTGAGAAGTTGTTTCACTTTGAAACATTAGAATCCTGCCCATCTGTTGTCCCAAAAATTAATGCCACCACTGCAGCTCCTCCTAGATTGCTTCGAGAATCTACAATTTCTGAAGAGATTGTGAGGCCTGAGGGTCCATCTGTTGAGTACCACTGTAACTCGTGCTCTGCTGATTGCTCCCGCAAACGTTACCACTGCCAGAAGCGGGCAGATTTTGATTTATGTTCGGAGTGCTTTAACAATGGGAAATTTGATTCTGATATGTCTTCATCAGATTTTATTCTCATGGAGTCTGCTGGGGTTCCTGGTGCTAGTGGAGGTAAGTGGACAGATCAGGAAACTCTCCTCCTCCTTGAGGCTTTAGAGCTTTATAAGGAAAACTGGAATGAGATTGCAGAACATGTGGCCACCAAAACAAAAGCACAATGCATATTGCACTTCATTCAAATGCCAATTGAGGATACCTTTCTTGAATCGGAGGGTAATGTCGAAGTTGGTGGAAAAGAAAGTATTGTTCCACCTTTAATTGAAAATGATTCATCTGTTCCTTCTGATATCACTGAATCTGTGGATAATAAGGCTACTGGAAAAGAGGCTTCGAGTGTAGAAAATGCGAGCAGCAAGGAAGATACAGGTGAGGTAAAAGTTGGGCAGGATAATCCAAAATCAGAGGATGTCGAAGGAAAAGCTTCACTAGTTAAGTTTAAATCAAAAGATGGTGATGAGAAGGTTTCTGACATTGCCTTGAATGCTTTGAGGGAGGCATTTGAAGCCATTGGTTATGTATTAACCCCTGAGCACTCACTTTCATTTGCTGATGTAGGGAACCCTGTCATGGCACTGGCTGCATTCCTTGCACGCTTAGTTGGATCAGATGTTGCCAGTGCATCAGCCCGTTTTTCTTTGAAAAGCACATCTCAGAAATCTCCCAGTTTAGAACTGGCTACAAGGCACTGCTTTATTTTAGAAGATCCACCGGATGACAAGAAAGCAGAAGATAATTTAGAGAGCGTTGACAATGTGGAAGCTCAGAAAAATGATAAGGAACAAAGTGCAAAACAGAGTGAAGACAATTCTACTTCAATCTTAGATGATAGAGCCTTATCAACTAATAACAGTAATAACAAAAGTGGGGAATCTGTGACAAAGGAAACAACGGAGAATGGAAATTCTTCAGATGCTATTAGAGAACACGATCCAATCACCAATCATGGTTCAGATACGTCTAGTAATTTGAAAGAATTGGGAGAAAAAGAATTGTCGAAGGATGAAAAGACAGGCATTGTGAAGGAATCTGAAAATTTAGAATCAAAATTGACATCAAATCCAGTTGAAACATCGGGAGAAGGAACTACCGTTGAAAAACCATTAGAATCAACGTTGTCATCAAATGATGTACATATGTCAGATTTGCAGCATGCTGAAAGATCTGAGATTCAGAAACAAGTTCCACCTCATTCTGCCAAAATATCAAAAGAATTAGATGATGAGACGAAACATTTATCATCTGGGGATGAGCTTCAACCAATAAGTTCTGCTAATTCTGTGAAAGAAGCCTCAAACGATGTAGCTATGGTGTCCGATTCTCATGATAAGAATGAGGCTGGACAAACTGAAACACCTAAATCTTTGGTTAACGAGGGAGCAAGCAAGGTCTCTGATTCTTTGCCCTCAGAAGAGAATGCGAGTACAGAACCTGTCAAACCAAATTCAGTTGTTGAAAGAAGAGCAGATGATAATCAAAGCAAGGACAATAAAGAAGAAAACTCCAACAGTACAGGTAAAAAAGAAGAAAAGATTGATAAGCTGAAGCGTGCTGCGGTTACAACACTGTCAGCAGCTGCAGTGAAGGCAAAAGTACTGGCTAATCAGGAAGAGGACCAAATCCGTCAACTTGCCATGATCTTAATCGAAAAGCAGCTGCGCAAGTTGGAAAGCAAGTTAGCATTCTTCAACGAGATGGATAATGTGACATTGAGAGTGAGGGAGCAACTAGACAGGTCAAAGCAGAGGCTTTTCCAAGAACGTGCACAGATAATTGCCGCTCGACTCGGCTTACCTGCTTCGTCATCACGAGGTGTGGCACCGACGTTACCAGCGAATAGAATGGCCATGAACTTTCCAAACTCAGCCCCAAGGCCTCCAATGGGCATGACACCCCAAAGGCCACCGACTTCAGGACCGCCGGGTATGGCTCCTACTAACCCTAACCCCCAATATGCACCCACCAGTACAACAATTTCTGGGAGTTCAATTCGCCCTGCGAATCAGGACGCACTTTCTTCTGTTGGGACCAAGTAA 3081 43.36 MEDKRRDTANIPSNTTDSPSSEPPSSRRRAGAHKRKASALGASNTLSAPSKRVTRDKSALSHPPNHNGPFTRARLGPNNVAGAASVHAAGGLAPGSVKADGSLLHSEVQRGDALLSAAEELNKATRLANLEASFEVDYEAIKSRGANVHVVPNHCGWFSWTKVHPIEERSLSTFFSGKAANRSPDIYIEIRNWIMKKFHANPSTQIESKDLSELEVGELDARQEVMEFLDHWGLINFHPFPATDSISTNDVNDENQKDSLIEKLFHFETLESCPSVVPKINATTAAPPRLLRESTISEEIVRPEGPSVEYHCNSCSADCSRKRYHCQKRADFDLCSECFNNGKFDSDMSSSDFILMESAGVPGASGGKWTDQETLLLLEALELYKENWNEIAEHVATKTKAQCILHFIQMPIEDTFLESEGNVEVGGKESIVPPLIENDSSVPSDITESVDNKATGKEASSVENASSKEDTGEVKVGQDNPKSEDVEGKASLVKFKSKDGDEKVSDIALNALREAFEAIGYVLTPEHSLSFADVGNPVMALAAFLARLVGSDVASASARFSLKSTSQKSPSLELATRHCFILEDPPDDKKAEDNLESVDNVEAQKNDKEQSAKQSEDNSTSILDDRALSTNNSNNKSGESVTKETTENGNSSDAIREHDPITNHGSDTSSNLKELGEKELSKDEKTGIVKESENLESKLTSNPVETSGEGTTVEKPLESTLSSNDVHMSDLQHAERSEIQKQVPPHSAKISKELDDETKHLSSGDELQPISSANSVKEASNDVAMVSDSHDKNEAGQTETPKSLVNEGASKVSDSLPSEENASTEPVKPNSVVERRADDNQSKDNKEENSNSTGKKEEKIDKLKRAAVTTLSAAAVKAKVLANQEEDQIRQLAMILIEKQLRKLESKLAFFNEMDNVTLRVREQLDRSKQRLFQERAQIIAARLGLPASSSRGVAPTLPANRMAMNFPNSAPRPPMGMTPQRPPTSGPPGMAPTNPNPQYAPTSTTISGSSIRPANQDALSSVGTK* 1027
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6388986 6403995 - Chy1G007960.1 Chy01g00796 217977

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy01g00796 1026 SMART zz_5 306 350 IPR000433 GO:0008270
Chy01g00796 1026 MobiDBLite consensus disorder prediction 440 467 - -
Chy01g00796 1026 Gene3D - 303 353 IPR043145 -
Chy01g00796 1026 Gene3D - 155 240 IPR036388 -
Chy01g00796 1026 ProSiteProfiles SWIRM domain profile. 149 246 IPR007526 GO:0005515
Chy01g00796 1026 SUPERFAMILY Homeodomain-like 146 243 IPR009057 -
Chy01g00796 1026 MobiDBLite consensus disorder prediction 729 763 - -
Chy01g00796 1026 MobiDBLite consensus disorder prediction 798 828 - -
Chy01g00796 1026 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 367 415 IPR017930 -
Chy01g00796 1026 Pfam Myb-like DNA-binding domain 367 409 IPR001005 -
Chy01g00796 1026 PANTHER SWI/SNF COMPLEX SUBUNIT SWI3D 44 985 - -
Chy01g00796 1026 MobiDBLite consensus disorder prediction 764 782 - -
Chy01g00796 1026 MobiDBLite consensus disorder prediction 600 861 - -
Chy01g00796 1026 MobiDBLite consensus disorder prediction 693 728 - -
Chy01g00796 1026 MobiDBLite consensus disorder prediction 1 76 - -
Chy01g00796 1026 MobiDBLite consensus disorder prediction 436 487 - -
Chy01g00796 1026 MobiDBLite consensus disorder prediction 831 861 - -
Chy01g00796 1026 CDD SANT 385 410 IPR001005 -
Chy01g00796 1026 SUPERFAMILY RING/U-box 308 356 - -
Chy01g00796 1026 MobiDBLite consensus disorder prediction 967 1026 - -
Chy01g00796 1026 Pfam SWIRM-associated region 1 869 946 IPR032451 -
Chy01g00796 1026 MobiDBLite consensus disorder prediction 671 692 - -
Chy01g00796 1026 MobiDBLite consensus disorder prediction 600 614 - -
Chy01g00796 1026 Pfam Zinc finger, ZZ type 309 344 IPR000433 GO:0008270
Chy01g00796 1026 ProSiteProfiles SANT domain profile. 364 415 IPR017884 -
Chy01g00796 1026 Gene3D - 364 415 - -
Chy01g00796 1026 MobiDBLite consensus disorder prediction 973 996 - -
Chy01g00796 1026 CDD ZZ_RSC8 310 354 IPR041984 -
Chy01g00796 1026 ProSiteProfiles Zinc finger ZZ-type profile. 307 361 IPR000433 GO:0008270
Chy01g00796 1026 Pfam SWIRM domain 152 237 IPR007526 GO:0005515
Chy01g00796 1026 PANTHER SWI/SNF COMPLEX-RELATED 44 985 - -
Chy01g00796 1026 Coils Coil 598 618 - -
Chy01g00796 1026 ProSiteProfiles Myb-like domain profile. 361 411 IPR001005 -
Chy01g00796 1026 MobiDBLite consensus disorder prediction 11 25 - -
Chy01g00796 1026 SUPERFAMILY Homeodomain-like 364 417 IPR009057 -
Chy01g00796 1026 MobiDBLite consensus disorder prediction 468 487 - -
Chy01g00796 1026 MobiDBLite consensus disorder prediction 997 1026 - -
Chy01g00796 1026 MobiDBLite consensus disorder prediction 615 649 - -
Chy01g00796 1026 SMART sant 365 413 IPR001005 -
Chy01g00796 1026 MobiDBLite consensus disorder prediction 40 65 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy01g00796 K11649 SMARCC; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C - csv:101218015 1910.19
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g00796 Chy-Chr1:6388986 Chy07g00621 Chy-Chr7:5750717 2.51E-09 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g579 . . . . . . . . Cmo19g00671 . . . . . . . Cpe15g00532 Bhi05g01108 . . . . . . Cla02g00530 Cam02g0548 Cec02g0549 Cco02g0555 Clacu02g0549 Cmu02g0544 Cre02g0875 Cone12ag1145 Cone8ag1193 . . . . . . Blo04g00506 . . Bda14g00547 . . Bma03g00547 . . . . . Cma19g00658 . Car19g00501 . . . . . . . . . . . . . . . . Lsi11g01094 . Chy01g00796 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007586 1 1 1 1 1 1 2 1 1 1 1 1 2 0 1 3 1 2 2 1 1 1 1 1 2 1 1 1 1 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy01g00796 Chy_Chr01 FPKM 0.558442 0.963159 8.275158 8.693158 1.89195 1.46918 2.839634 10.59015 11.813075 12.48316