Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy01g00820 ATGTCCAACCAACTCATAACCTTGTATGCGAAACATGGTCTTCTTAACGATGCCCAGAAAGTGTTTGACGAAATGCCTGAACGAAATGTTTTCTCTTGGAATGCTATAATAGCAGCGTATATTAAGTCTCAGAACTTGAGACAAGCACGGGCATTGTTTGACTCTGCTCTCTGTAAAGATTTGGTTACTTACAACTCTATGTTGTCGGGTTATGCTCGTTCTGATGGGTATCAGGGTCAAGCACTTGGGTTTTTTATGGAAATGCAAACGGCTCCTGATATCATTAGAATGGATGAGTTCACTCTCATAATCATGCTTAATTTAACGGCTAAGTTGTGTGTGATTTCTTACGGAAAGCAGTTGCATTCGTTCATGTTGAAGACTGCTAATGATTTAACTGTGTTTGCTGCTAGTTCCCTGATTGATATGTACTCTAAGTGTGGGTGTTTTAAAGAAGCATGTAGAGTTTATTATGGATGTGGTGAGGTGGTTGATTCGGTCTCTAGAAATGCCATGGTTGCAGCTTGTTGTAGAGAAGGGGAGATAGATGTGGCTTTGGATCTTTTCTGGAAGGAATTGGAGCAAAATGATGTTGTAGCATGGAACACGATGATTTCAGGTTTTGTTCAGAATGGTTATGATGAAGAGTCATTGAAATTATTCGTTCGTATGGCAGATGAAAAGGTTGAGTGGAATGAACACACTTTTGCAAGTGTCTTGAGTGCTTGCTCCAATCTGAGGAGCTTGAAGCTTGGGAAGGAAGTCCACGCTTATGTTTTGAAGAATAGATTGATTGCCAATCCCTTCATTTGCAGTGGCCTTGTTGATGTTTACTGCAAGTGTAATAACATGAGGTATGCGGAGTCAGTTAATTCAGAATTGAGGATGCAGAATGTATATTCGATCACTTCAATGATTGTTGGCTATTCGTCTCAAGGTAACATGGCAGAAGCCAGAAAGCTTTTTGATTCCTTGGATGAAAAGAATTCTGTTGTGTGGACTGCTTTGTTTTTTGGATATGTTAAATTGCAACAGTGTGAAGCAGTTTTTGAACTTTTAAGTGAATATAGGAAGGAGGTAAAAGTTCCTGATGTGCTAATTCTTATCAGCATAATTGGAGCTTGTGCTATACAAGCTGCTCTGGTTCCTGGTAAGCAGATACACAGTTACATGCTCCGAGCAGGCATCAAATTGGATACAAAACTGACAAGTTCATTGGTTGATATGTACTCAAAATGTGGAGGTATCATTTATGCAGAAAGGATTTTTAGAGAAGTTACTGATAAGGATTCCATTGTTTACAACATTATGATAGCTGGCTATGCTCACCATGGGTGGGAAAATGAAGCAGTCCAGCTTTTCAAGGAAATGGTTGAACATGATCTCAAACCAGATGCAATCACTTTCGTTGCACTACTTTCAGCTTGTCGACACGGTGGTTTGGTAGAACTTGGGGAACATTTTTTTTATTCTATGTCTAATTACAATATTTGTCCTGAAATTGATCATTATGCTTGTATGATTGACTTGTATGGAAGGGCTAACCAACTAGATAAGGCATTGGAGTTCATGAGAAAGATTCCCATACAGTTAGATGCTGTCATTTGGGGAGCATTTCTGAATGCTTGTAGGATCAATGGGAATGCTGAACTAGCAAGAAAAGCAGAAGATGAACTGTTGGTAATCGAAGGAGAAAATGGATCTCGATACGTGCAGTTAGCTAATGTATATGCTGCAGAAGGAAACTGGGAGGAGATGGGAAGAATAAGGAAGAAAATGAAAGGAAAGGAGGTTAAGAAGAATGCTGGTTGTAGTTGGGTTTTTGTGGAAAGTAAGTTCCATGTATTCATTTCTGGTGATAGATTTCACTCAAAAAATGAAGCTATATATTCAACCTTAGCCTCCTTGACTGATGAGCTACTTTACAAAGAGGAAGCATTTTGTTAA 1947 39.03 MSNQLITLYAKHGLLNDAQKVFDEMPERNVFSWNAIIAAYIKSQNLRQARALFDSALCKDLVTYNSMLSGYARSDGYQGQALGFFMEMQTAPDIIRMDEFTLIIMLNLTAKLCVISYGKQLHSFMLKTANDLTVFAASSLIDMYSKCGCFKEACRVYYGCGEVVDSVSRNAMVAACCREGEIDVALDLFWKELEQNDVVAWNTMISGFVQNGYDEESLKLFVRMADEKVEWNEHTFASVLSACSNLRSLKLGKEVHAYVLKNRLIANPFICSGLVDVYCKCNNMRYAESVNSELRMQNVYSITSMIVGYSSQGNMAEARKLFDSLDEKNSVVWTALFFGYVKLQQCEAVFELLSEYRKEVKVPDVLILISIIGACAIQAALVPGKQIHSYMLRAGIKLDTKLTSSLVDMYSKCGGIIYAERIFREVTDKDSIVYNIMIAGYAHHGWENEAVQLFKEMVEHDLKPDAITFVALLSACRHGGLVELGEHFFYSMSNYNICPEIDHYACMIDLYGRANQLDKALEFMRKIPIQLDAVIWGAFLNACRINGNAELARKAEDELLVIEGENGSRYVQLANVYAAEGNWEEMGRIRKKMKGKEVKKNAGCSWVFVESKFHVFISGDRFHSKNEAIYSTLASLTDELLYKEEAFC* 649
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6833748 6835694 + Chy1G008200.1 Chy01g00820 218001

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy01g00820 648 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 197 231 IPR002885 -
Chy01g00820 648 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 298 332 IPR002885 -
Chy01g00820 648 Gene3D Tetratricopeptide repeat domain 115 196 IPR011990 GO:0005515
Chy01g00820 648 Gene3D Tetratricopeptide repeat domain 1 113 IPR011990 GO:0005515
Chy01g00820 648 Pfam PPR repeat 331 357 IPR002885 -
Chy01g00820 648 Pfam PPR repeat 31 55 IPR002885 -
Chy01g00820 648 Pfam PPR repeat 303 329 IPR002885 -
Chy01g00820 648 Pfam PPR repeat 167 189 IPR002885 -
Chy01g00820 648 Pfam PPR repeat 62 75 IPR002885 -
Chy01g00820 648 Pfam PPR repeat 3 30 IPR002885 -
Chy01g00820 648 Pfam PPR repeat 504 526 IPR002885 -
Chy01g00820 648 Pfam PPR repeat 138 157 IPR002885 -
Chy01g00820 648 Gene3D Tetratricopeptide repeat domain 485 627 IPR011990 GO:0005515
Chy01g00820 648 Pfam E motif 548 607 IPR046848 -
Chy01g00820 648 Pfam PPR repeat family 197 244 IPR002885 -
Chy01g00820 648 Pfam PPR repeat family 429 476 IPR002885 -
Chy01g00820 648 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 165 196 IPR002885 -
Chy01g00820 648 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 430 464 IPR002885 -
Chy01g00820 648 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 309 620 - -
Chy01g00820 648 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 47 325 - -
Chy01g00820 648 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 2 191 - -
Chy01g00820 648 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 60 91 IPR002885 -
Chy01g00820 648 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1 32 IPR002885 -
Chy01g00820 648 Gene3D Tetratricopeptide repeat domain 365 484 IPR011990 GO:0005515
Chy01g00820 648 Gene3D Tetratricopeptide repeat domain 208 364 IPR011990 GO:0005515
Chy01g00820 648 TIGRFAM PPR: pentatricopeptide repeat domain 170 199 IPR002885 -
Chy01g00820 648 TIGRFAM PPR: pentatricopeptide repeat domain 432 466 IPR002885 -
Chy01g00820 648 TIGRFAM PPR: pentatricopeptide repeat domain 300 329 IPR002885 -
Chy01g00820 648 TIGRFAM PPR: pentatricopeptide repeat domain 199 233 IPR002885 -
Chy01g00820 648 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 465 499 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy01g00820 - - - csv:101217455 1261.13
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g00820 Chy-Chr1:6833748 Chy10g01295 Chy-Chr10:17419053 2.87E-30 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g563 . . . . . . . . Cmo19g00661 . . . . . . . Cpe15g00525 Bhi05g01201 . . . . . . Cla02g00543 . . . . . . . . . . . Csa07g00783 . Cme01g01469 . . . Bda14g00541 . . . . . . Cmo16g00372 . Cma19g00651 . Car19g00495 . . . . . . . . . . . . . . . . Lsi11g01072 . Chy01g00820 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013461 1 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 26
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy01g00820 Chy_Chr01 FPKM 4.484018 3.992027 6.488661 7.267703 3.553158 3.663979 3.314907 7.977216 9.575188 13.399063