Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy01g00828 ATGATGGACGACAACCGGTGGCCAGAGAGGCTGGCAGCAACAACCAATGGTCGACAGTGGAAGGTTCTAGTTGAGAGAGAGGTGGTGATAGGGAGGCTTTTTGGACAGACAAAGATATCACAACGGACATACGAGATACAAGAGATCATAATAATGATGCCTGAAAATGAACAACAATTAGTAAGTGTTCCACCAGGTTTTCGATTCCATCCAACAGATGAGGAGCTTCTTTATTACTACCTTAGGAAGAAGGTTTCTTATGAAGCCATTGAGCTTGATGTTATCAGGGAAGTGGATCTAAACAAACTGGAGCCTTGGGATCTCAAAGATAAATGTAGAATTGGATCTGGGCATCAAAACGAGTGGTATTTCTTTAGCCATAAGGACAAAAAATATCCAACTGGAACTCGAACAAATAGAGCAACCAGTGCTGGATTTTGGAAGGCAACAGGGAGGGACAAAACCATTCACATGAGCAGTTCCAATTCCAACTCCAAAAGGATTATTGGGATGAGGAAGACATTGGTTTTCTACACAGGTCGTGCTCCTCATGGCCAAAAGACTGATTGGATCATGCATGAATACCGTCTTGAACATCACAATCCCGAGGTGCAGGAAGATGGGTGGGTGGTGTGCAGAGTTTTCAAGAAAAAAAGTCAGAAGCCAGAGGTTCCGGAAGAGCAGCAGTTAGATTACTATGCGCATACGAAGCTAGGTGGCAGTTCTGGTTCGGCCGTGGGTACAGAAATGGGAGAGCCAAAAAACAATAATAATCATATGCAAGAACCACATAATAATAATGATTATAGCTTTGATGGTTGCATGCAACTGCCCCAGCTGTTTAGTCCAGAGTCATCGACAGTTCCAACGCTACCGGCTATCTCCTTAAACGCCGCCGGTGCTGCTGTAGAGTGTCCTCAAAATATATGGAGGTTAAGTTGCGGGGTGGTGCAACATGAGCGGTTGAACACTACTGATTGGTCATTCTTGAATAGGCTTCTTGCTTTGGATCAACAATCCCGTTCCAAATCTACCCTTTCGGATGACCTTACTATTTCCAGAAACTTTTCATTTCCGTTTCCCTATCCTTATCACCTTCCCTCTGGTCCCGACTTTATCAAATTCTCCAAGTAG 1134 44.09 MMDDNRWPERLAATTNGRQWKVLVEREVVIGRLFGQTKISQRTYEIQEIIIMMPENEQQLVSVPPGFRFHPTDEELLYYYLRKKVSYEAIELDVIREVDLNKLEPWDLKDKCRIGSGHQNEWYFFSHKDKKYPTGTRTNRATSAGFWKATGRDKTIHMSSSNSNSKRIIGMRKTLVFYTGRAPHGQKTDWIMHEYRLEHHNPEVQEDGWVVCRVFKKKSQKPEVPEEQQLDYYAHTKLGGSSGSAVGTEMGEPKNNNNHMQEPHNNNDYSFDGCMQLPQLFSPESSTVPTLPAISLNAAGAAVECPQNIWRLSCGVVQHERLNTTDWSFLNRLLALDQQSRSKSTLSDDLTISRNFSFPFPYPYHLPSGPDFIKFSK* 378
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6991070 6995410 - Chy1G008280.1 Chy01g00828 218009
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy01g00828 377 Pfam No apical meristem (NAM) protein 64 197 IPR003441 GO:0003677|GO:0006355
Chy01g00828 377 ProSiteProfiles NAC domain profile. 63 217 IPR003441 GO:0003677|GO:0006355
Chy01g00828 377 SUPERFAMILY NAC domain 57 217 IPR036093 GO:0003677|GO:0006355
Chy01g00828 377 PANTHER PROTEIN SOMBRERO 58 343 - -
Chy01g00828 377 Gene3D NAC domain 72 222 IPR036093 GO:0003677|GO:0006355
Chy01g00828 377 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 58 343 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g00828 Chy-Chr1:6991070 Chy06g02017 Chy-Chr6:24104999 3.16E-75 dispersed
Chy01g01443 Chy-Chr1:20018119 Chy01g00828 Chy-Chr1:6991070 1.46E-52 transposed
Chy02g01056 Chy-Chr2:7259060 Chy01g00828 Chy-Chr1:6991070 1.93E-44 transposed
Chy03g00467 Chy-Chr3:6572894 Chy01g00828 Chy-Chr1:6991070 1.40E-42 transposed
Chy03g01225 Chy-Chr3:15341692 Chy01g00828 Chy-Chr1:6991070 2.22E-58 transposed
Chy04g00070 Chy-Chr4:738429 Chy01g00828 Chy-Chr1:6991070 1.26E-50 transposed
Chy04g01087 Chy-Chr4:16648572 Chy01g00828 Chy-Chr1:6991070 9.43E-53 transposed
Chy07g00419 Chy-Chr7:3269000 Chy01g00828 Chy-Chr1:6991070 7.87E-55 transposed
Chy09g00234 Chy-Chr9:1925772 Chy01g00828 Chy-Chr1:6991070 1.54E-52 transposed
Chy09g01338 Chy-Chr9:15227760 Chy01g00828 Chy-Chr1:6991070 4.55E-84 transposed
Chy12g00666 Chy-Chr12:9637369 Chy01g00828 Chy-Chr1:6991070 2.81E-42 transposed
Chy01g00828 Chy-Chr1:6991070 Chy11g01048 Chy-Chr11:14957772 4.05E-14 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17300 PF02365 NAM 4.40E-39 No_clan Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy01g00828 - - csv:101216749 676.396