Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy01g00832 ATGGCTAATCGGCTGCACAGCTACAACTCCGCCTATGGTGCGGTGTCTGCCTCTGCCACTGCCACTGCGGTTCCATCTCTTCCCACCACGTACTCGTCTTCCCGTTCCCTTTCCGACATCGTCTCCGGCCGTTATCTCCTGCCAGACTCGCTGTCCTCCGGTATCTCCATTAAGCACTCTGTTACTGATCGTGGTACCTCCATGTATTCGACCCAGAAAGAAGGCCCTATGTTGTCGTCTGCCGATATTGTTCCGAGAACGTCGCATTTGGTCTCTCAATTCTCTTGGCCGGGTTCTCATGTTGCAGCTGCGCTTGACTCTGTTGTTTCTGGCATCAAACGTTCTTCTGACGTGCTCTACGATCAGACTGTTTTGGGTTCCTATAACACTTTGGGGCAAAGTGAAGCCTGGTATACTTCAAATTCTTTAGCCAAGCGTCCTAGATTTGAAAGTACAAGCAATTTGCCTGTATATCCACAGAGGCCTGGAGAGAAGGACTGTGCCCACTATATGCTCACAAGAACCTGTAAATTTGGAGATAGCTGCAAGTTTGACCATCCTATTTGGGTTCCTGAAGGTGGAATCCCAGATTGGAAAGAGGTCCCACAAATAGCTAATAGTGAAGATCTCCCAGAAAGACTTGGGGATCCAGATTGTCCATACTTTCTGAAAACTCAAAGATGTAAATTTGGTTCAAGATGCAAGTTCAATCACCCTAAAGATAGATCTGATTCTGTGGGTGCTGAAAAATCTGATGCTTCATCATTACCTGAGAGACCTTCTGAGCCACTGTGTGCATTCTATGTTAAGACTGGAAATTGCAAATTCGGTATCAACTGCAAGTTCCATCACCCAAAAGATATCCAAATTTTATCGGGGGAAGAATATGGAAATAGCGAACAAACTTTGATGGTGAAGACAGAAGAAAGAGCTGGAGACTTCAAGCTTGTTAAGCCTCCTATTTCGTTGTCACCAGCCCTAATGCACAATTCTAAAGGACTTCCGATTAGACCGGGCGAAGTGGATTGTCCATTCTACTTGAAAACTGGCAGTTGCAAGTATGGTACCACTTGCCGCTACAATCACCCTGACAGAAATGCAATCAATCCATCTACTCCTGCAATGGTTCATCCTGCTATGGTTTCAACTGCTAATATGAATACTGGATTTGTTAATCCTTCTAATGCTATTTATCAAGCTGTTGACCCCAGATTGATTCAGCCATTGTTGGGATCTGGCTCAAGTATTTACCCTCAACGCCCTGGGCAGATAGAATGTGACTTTTATATGAAGACTGGGGACTGTAAATTTGGGGAACGCTGCAAATTTCATCACCCTATTGATCGGTCAGCACCAAAGCAGAGTGCTCTACATAATGTGAAACTAACATTGGCAGGACTACCGAGGAGAGAGTTTGTTCAACTTGAGGGGTCCGACAAGACTGGAAACCGTGTTGTTGGAAAGTACTTCCCTGCTGTGGTTAACGAGTTGTCTAAGGGTTCATTTTGCATTGTGTGCTTTCATACTACTGACCAGAAGGATGATAATTGTTCAGGCCTTACCATCTTGAGGTGGATTTATGAAGAACTTCCATCTGATTACAAGGATAGACTTCAAGTTCTCTACTTTGTACATCCTGGTCTCCGTTGGAGGCTTGTTTTGGGAGAGGTTGAGATTCCTGACTACGTAAACAGTCACAATGAAGTTCTTGAACGCAGATCACTAAATGATTATGGCATTGAACCCGATTCCCTCAATGTCATGGAGGTACCTTATTGTGCAAACTCCTTTGGGAGATATGAGGAGAGATGGATGTCAAGGCAGTACATGGCATAG 1836 44.77 MANRLHSYNSAYGAVSASATATAVPSLPTTYSSSRSLSDIVSGRYLLPDSLSSGISIKHSVTDRGTSMYSTQKEGPMLSSADIVPRTSHLVSQFSWPGSHVAAALDSVVSGIKRSSDVLYDQTVLGSYNTLGQSEAWYTSNSLAKRPRFESTSNLPVYPQRPGEKDCAHYMLTRTCKFGDSCKFDHPIWVPEGGIPDWKEVPQIANSEDLPERLGDPDCPYFLKTQRCKFGSRCKFNHPKDRSDSVGAEKSDASSLPERPSEPLCAFYVKTGNCKFGINCKFHHPKDIQILSGEEYGNSEQTLMVKTEERAGDFKLVKPPISLSPALMHNSKGLPIRPGEVDCPFYLKTGSCKYGTTCRYNHPDRNAINPSTPAMVHPAMVSTANMNTGFVNPSNAIYQAVDPRLIQPLLGSGSSIYPQRPGQIECDFYMKTGDCKFGERCKFHHPIDRSAPKQSALHNVKLTLAGLPRREFVQLEGSDKTGNRVVGKYFPAVVNELSKGSFCIVCFHTTDQKDDNCSGLTILRWIYEELPSDYKDRLQVLYFVHPGLRWRLVLGEVEIPDYVNSHNEVLERRSLNDYGIEPDSLNVMEVPYCANSFGRYEERWMSRQYMA* 612
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 7105374 7116169 - Chy1G008320.1 Chy01g00832 218013
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy01g00832 611 PANTHER CCCH ZINC FINGER/TIS11-RELATED 70 471 IPR045877 GO:0003729
Chy01g00832 611 Pfam Divergent CRAL/TRIO domain 494 554 IPR001251 -
Chy01g00832 611 Gene3D - 470 567 IPR036865 -
Chy01g00832 611 Gene3D - 210 297 - -
Chy01g00832 611 SUPERFAMILY CCCH zinc finger 218 242 IPR036855 GO:0046872
Chy01g00832 611 SUPERFAMILY CCCH zinc finger 163 188 IPR036855 GO:0046872
Chy01g00832 611 ProSiteProfiles Zinc finger C3H1-type profile. 161 189 IPR000571 GO:0046872
Chy01g00832 611 ProSiteProfiles Zinc finger C3H1-type profile. 337 365 IPR000571 GO:0046872
Chy01g00832 611 SUPERFAMILY CCCH zinc finger 423 448 IPR036855 GO:0046872
Chy01g00832 611 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 163 187 IPR000571 GO:0046872
Chy01g00832 611 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 217 240 IPR000571 GO:0046872
Chy01g00832 611 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 262 286 IPR000571 GO:0046872
Chy01g00832 611 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 339 363 IPR000571 GO:0046872
Chy01g00832 611 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 423 446 IPR000571 GO:0046872
Chy01g00832 611 ProSiteProfiles Zinc finger C3H1-type profile. 420 448 IPR000571 GO:0046872
Chy01g00832 611 SUPERFAMILY CCCH zinc finger 341 364 IPR036855 GO:0046872
Chy01g00832 611 MobiDBLite consensus disorder prediction 240 259 - -
Chy01g00832 611 SUPERFAMILY CCCH zinc finger 262 286 IPR036855 GO:0046872
Chy01g00832 611 Gene3D - 377 456 - -
Chy01g00832 611 Gene3D - 326 373 - -
Chy01g00832 611 Gene3D - 127 200 - -
Chy01g00832 611 ProSiteProfiles Zinc finger C3H1-type profile. 213 241 IPR000571 GO:0046872
Chy01g00832 611 SMART c3hfinal6 161 188 IPR000571 GO:0046872
Chy01g00832 611 SMART c3hfinal6 420 447 IPR000571 GO:0046872
Chy01g00832 611 SMART c3hfinal6 259 286 IPR000571 GO:0046872
Chy01g00832 611 SMART c3hfinal6 337 364 IPR000571 GO:0046872
Chy01g00832 611 SMART c3hfinal6 213 240 IPR000571 GO:0046872
Chy01g00832 611 ProSiteProfiles Zinc finger C3H1-type profile. 259 287 IPR000571 GO:0046872
Chy01g00832 611 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 37 70 471 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g00832 Chy-Chr1:7105374 Chy04g01642 Chy-Chr4:22824861 9.20E-67 dispersed
Chy01g00831 Chy-Chr1:7081244 Chy01g00832 Chy-Chr1:7105374 4.90E-06 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17303 PF13716 CRAL_TRIO_2 4.90E-07 CL0512 Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy01g00832 - - csv:101212896 956.051