Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy01g00832 ATGGCTAATCGGCTGCACAGCTACAACTCCGCCTATGGTGCGGTGTCTGCCTCTGCCACTGCCACTGCGGTTCCATCTCTTCCCACCACGTACTCGTCTTCCCGTTCCCTTTCCGACATCGTCTCCGGCCGTTATCTCCTGCCAGACTCGCTGTCCTCCGGTATCTCCATTAAGCACTCTGTTACTGATCGTGGTACCTCCATGTATTCGACCCAGAAAGAAGGCCCTATGTTGTCGTCTGCCGATATTGTTCCGAGAACGTCGCATTTGGTCTCTCAATTCTCTTGGCCGGGTTCTCATGTTGCAGCTGCGCTTGACTCTGTTGTTTCTGGCATCAAACGTTCTTCTGACGTGCTCTACGATCAGACTGTTTTGGGTTCCTATAACACTTTGGGGCAAAGTGAAGCCTGGTATACTTCAAATTCTTTAGCCAAGCGTCCTAGATTTGAAAGTACAAGCAATTTGCCTGTATATCCACAGAGGCCTGGAGAGAAGGACTGTGCCCACTATATGCTCACAAGAACCTGTAAATTTGGAGATAGCTGCAAGTTTGACCATCCTATTTGGGTTCCTGAAGGTGGAATCCCAGATTGGAAAGAGGTCCCACAAATAGCTAATAGTGAAGATCTCCCAGAAAGACTTGGGGATCCAGATTGTCCATACTTTCTGAAAACTCAAAGATGTAAATTTGGTTCAAGATGCAAGTTCAATCACCCTAAAGATAGATCTGATTCTGTGGGTGCTGAAAAATCTGATGCTTCATCATTACCTGAGAGACCTTCTGAGCCACTGTGTGCATTCTATGTTAAGACTGGAAATTGCAAATTCGGTATCAACTGCAAGTTCCATCACCCAAAAGATATCCAAATTTTATCGGGGGAAGAATATGGAAATAGCGAACAAACTTTGATGGTGAAGACAGAAGAAAGAGCTGGAGACTTCAAGCTTGTTAAGCCTCCTATTTCGTTGTCACCAGCCCTAATGCACAATTCTAAAGGACTTCCGATTAGACCGGGCGAAGTGGATTGTCCATTCTACTTGAAAACTGGCAGTTGCAAGTATGGTACCACTTGCCGCTACAATCACCCTGACAGAAATGCAATCAATCCATCTACTCCTGCAATGGTTCATCCTGCTATGGTTTCAACTGCTAATATGAATACTGGATTTGTTAATCCTTCTAATGCTATTTATCAAGCTGTTGACCCCAGATTGATTCAGCCATTGTTGGGATCTGGCTCAAGTATTTACCCTCAACGCCCTGGGCAGATAGAATGTGACTTTTATATGAAGACTGGGGACTGTAAATTTGGGGAACGCTGCAAATTTCATCACCCTATTGATCGGTCAGCACCAAAGCAGAGTGCTCTACATAATGTGAAACTAACATTGGCAGGACTACCGAGGAGAGAGTTTGTTCAACTTGAGGGGTCCGACAAGACTGGAAACCGTGTTGTTGGAAAGTACTTCCCTGCTGTGGTTAACGAGTTGTCTAAGGGTTCATTTTGCATTGTGTGCTTTCATACTACTGACCAGAAGGATGATAATTGTTCAGGCCTTACCATCTTGAGGTGGATTTATGAAGAACTTCCATCTGATTACAAGGATAGACTTCAAGTTCTCTACTTTGTACATCCTGGTCTCCGTTGGAGGCTTGTTTTGGGAGAGGTTGAGATTCCTGACTACGTAAACAGTCACAATGAAGTTCTTGAACGCAGATCACTAAATGATTATGGCATTGAACCCGATTCCCTCAATGTCATGGAGGTACCTTATTGTGCAAACTCCTTTGGGAGATATGAGGAGAGATGGATGTCAAGGCAGTACATGGCATAG 1836 44.77 MANRLHSYNSAYGAVSASATATAVPSLPTTYSSSRSLSDIVSGRYLLPDSLSSGISIKHSVTDRGTSMYSTQKEGPMLSSADIVPRTSHLVSQFSWPGSHVAAALDSVVSGIKRSSDVLYDQTVLGSYNTLGQSEAWYTSNSLAKRPRFESTSNLPVYPQRPGEKDCAHYMLTRTCKFGDSCKFDHPIWVPEGGIPDWKEVPQIANSEDLPERLGDPDCPYFLKTQRCKFGSRCKFNHPKDRSDSVGAEKSDASSLPERPSEPLCAFYVKTGNCKFGINCKFHHPKDIQILSGEEYGNSEQTLMVKTEERAGDFKLVKPPISLSPALMHNSKGLPIRPGEVDCPFYLKTGSCKYGTTCRYNHPDRNAINPSTPAMVHPAMVSTANMNTGFVNPSNAIYQAVDPRLIQPLLGSGSSIYPQRPGQIECDFYMKTGDCKFGERCKFHHPIDRSAPKQSALHNVKLTLAGLPRREFVQLEGSDKTGNRVVGKYFPAVVNELSKGSFCIVCFHTTDQKDDNCSGLTILRWIYEELPSDYKDRLQVLYFVHPGLRWRLVLGEVEIPDYVNSHNEVLERRSLNDYGIEPDSLNVMEVPYCANSFGRYEERWMSRQYMA* 612
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 7105374 7116169 - Chy1G008320.1 Chy01g00832 218013

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy01g00832 611 PANTHER CCCH ZINC FINGER/TIS11-RELATED 70 471 IPR045877 GO:0003729
Chy01g00832 611 Pfam Divergent CRAL/TRIO domain 494 554 IPR001251 -
Chy01g00832 611 Gene3D - 470 567 IPR036865 -
Chy01g00832 611 Gene3D - 210 297 - -
Chy01g00832 611 SUPERFAMILY CCCH zinc finger 218 242 IPR036855 GO:0046872
Chy01g00832 611 SUPERFAMILY CCCH zinc finger 163 188 IPR036855 GO:0046872
Chy01g00832 611 ProSiteProfiles Zinc finger C3H1-type profile. 161 189 IPR000571 GO:0046872
Chy01g00832 611 ProSiteProfiles Zinc finger C3H1-type profile. 337 365 IPR000571 GO:0046872
Chy01g00832 611 SUPERFAMILY CCCH zinc finger 423 448 IPR036855 GO:0046872
Chy01g00832 611 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 163 187 IPR000571 GO:0046872
Chy01g00832 611 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 217 240 IPR000571 GO:0046872
Chy01g00832 611 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 262 286 IPR000571 GO:0046872
Chy01g00832 611 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 339 363 IPR000571 GO:0046872
Chy01g00832 611 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 423 446 IPR000571 GO:0046872
Chy01g00832 611 ProSiteProfiles Zinc finger C3H1-type profile. 420 448 IPR000571 GO:0046872
Chy01g00832 611 SUPERFAMILY CCCH zinc finger 341 364 IPR036855 GO:0046872
Chy01g00832 611 MobiDBLite consensus disorder prediction 240 259 - -
Chy01g00832 611 SUPERFAMILY CCCH zinc finger 262 286 IPR036855 GO:0046872
Chy01g00832 611 Gene3D - 377 456 - -
Chy01g00832 611 Gene3D - 326 373 - -
Chy01g00832 611 Gene3D - 127 200 - -
Chy01g00832 611 ProSiteProfiles Zinc finger C3H1-type profile. 213 241 IPR000571 GO:0046872
Chy01g00832 611 SMART c3hfinal6 161 188 IPR000571 GO:0046872
Chy01g00832 611 SMART c3hfinal6 420 447 IPR000571 GO:0046872
Chy01g00832 611 SMART c3hfinal6 259 286 IPR000571 GO:0046872
Chy01g00832 611 SMART c3hfinal6 337 364 IPR000571 GO:0046872
Chy01g00832 611 SMART c3hfinal6 213 240 IPR000571 GO:0046872
Chy01g00832 611 ProSiteProfiles Zinc finger C3H1-type profile. 259 287 IPR000571 GO:0046872
Chy01g00832 611 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 37 70 471 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy01g00832 - - - csv:101212896 956.051
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g00832 Chy-Chr1:7105374 Chy04g01642 Chy-Chr4:22824861 9.20E-67 dispersed
Chy01g00831 Chy-Chr1:7081244 Chy01g00832 Chy-Chr1:7105374 4.90E-06 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1194 Blo04g00450 Blo13g00612 . . . . Bma08g00829 . . . . . . . . . . Bhi05g01975 Tan02g0011 . . . . . . . . . . . . . . . . . Csa07g01227 . . . . . . Bpe15g00932 . Bma03g00483 . . . . . . . . Cpe15g00914 . . . . . . . . . . . . . . . . . Chy01g00832 Cme01g01486
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004512 1 5 3 1 2 2 0 1 2 1 1 1 0 1 1 1 1 2 1 2 1 1 1 1 1 2 1 1 3 1 42
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17303 PF13716 CRAL_TRIO_2 4.90E-07 CL0512 Chy TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy01g00832 Chy_Chr01 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0