Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy01g00837 GTGCTATATGAACTTGAAGATAAAGCAGAAGTCATTTTAGAGGAAAGAGCGGAACATGAGAGAATGATCGAGTCATATTCCCTGCTAAACCAAAAATTGCAAAATTCTATATCTGAACAGGAAATCCTGGAGAAAACTCTCCAAGAATTGAAGGCTGATTTGAAGAGACATGAGCGTGATTACTTGTTAATTCATAGAGAAAACATCGACCTTTCAAGACAGGTTACAATTCTTCTGAAGGAATGTCGAGATGTGCAACTTCGCTGTGGATATGTAGGAAATGATGTTCCCGAGAATATTTCAAATTCTACATCCTTTGAGATCAATATGGAATCTGAAGCTGATAGAGTTATTTCTGAATATCTTTTAACCTTCAAGGACATAAATGGATTAGTTGAGCAGAATGTCCAGCTTAGAAGCCTTGTACGTAAACTTTCTGTGCAGCTTCAAGATACAGAGCTTGATTTCAAGGAGAAATTGGAGGCTGAACTGAAAAAGAAAACTCAAGAAGCTGCATCTAGAGTTGAAGCAGTGTTACAAAAAGTTGAAGAACAGGGGCAGATGATTGAGTCCCTTCATGCTTCCGTTGCCATGTACAAAAGGCTATATGAAGAGGAGCATAAGCGTAATTTGCCCCTTCCCCTGTCTGCTGGAGTTGCTCTAGATTTTGGTCGAAAGGAACTTGAGTTTGTTTCTGAAGATTCTCAGGAGGCCAGAAAAGCTGATCAGGAGCAGGCTGCTAAACGAATAAGATATCTCGAGGAAGAACTCGAAAAATCTAGAAGTGAGGTAAATTTTGTTAGAGCTGAACGTAACAAGTTTGAACTGGAGATCGGTTTTGCAAAAGAAAAACTGGATAGTTTCATGAAGGAATTTGAGCAGCAGAGAGTAGAAATGAATGGCGTGTTAGCTCGAAATGTAGAGTTCTCACAACTTATTGTAGACTACCAAAGAAAACTGCGGGAAGTTTCAGAATCCCTGCACAGTGCTGATGAACAGTCCCGGAAATTGAGTATTGAGGTGTCTGTCTTAAAGTCTGAAAAGGACTTGTTATCAAATGCTGAAAAGAGAGCACAGGATGAAATTCAAAAACTGTCTGAAAGATTCTTCCGGGTGCAGACTTCTCTGGATACTATTCGGAGTGTTGAAGAAGTTCATGAGGAGGTTAGGGTTGTAGAAAGGAGAAAGCTGGTGGAACATGCTAAGCAACTCGAGAGGGAATGGGCTGAAGCAAAGAAAGAGTTGCAAGAAGAGAGGGACAATGTTCGAACTCTTACTCTTGATCGTGAGAAGACTTTAAAGAATGCAATGAGTCATGTTGAAGAGATGGGGAAGGAACTTGCAAATGCATTACATGCCACTGCAGCTGCTGAGGCAAGAGCTGCTGTTGCTGAGGCTAAACTGTCTGATCTTGAGAAGAAAATTTGTGCTTCAGATAATCAG 1443 40.54 VLYELEDKAEVILEERAEHERMIESYSLLNQKLQNSISEQEILEKTLQELKADLKRHERDYLLIHRENIDLSRQVTILLKECRDVQLRCGYVGNDVPENISNSTSFEINMESEADRVISEYLLTFKDINGLVEQNVQLRSLVRKLSVQLQDTELDFKEKLEAELKKKTQEAASRVEAVLQKVEEQGQMIESLHASVAMYKRLYEEEHKRNLPLPLSAGVALDFGRKELEFVSEDSQEARKADQEQAAKRIRYLEEELEKSRSEVNFVRAERNKFELEIGFAKEKLDSFMKEFEQQRVEMNGVLARNVEFSQLIVDYQRKLREVSESLHSADEQSRKLSIEVSVLKSEKDLLSNAEKRAQDEIQKLSERFFRVQTSLDTIRSVEEVHEEVRVVERRKLVEHAKQLEREWAEAKKELQEERDNVRTLTLDREKTLKNAMSHVEEMGKELANALHATAAAEARAAVAEAKLSDLEKKICASDNQ 481
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 7210836 7232699 - Chy1G008370.1 Chy01g00837 218018

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy01g00837 481 Coils Coil 157 185 - -
Chy01g00837 481 Coils Coil 2 67 - -
Chy01g00837 481 Coils Coil 313 333 - -
Chy01g00837 481 Coils Coil 394 421 - -
Chy01g00837 481 Coils Coil 344 368 - -
Chy01g00837 481 Coils Coil 454 474 - -
Chy01g00837 481 PANTHER NUCLEOPROTEIN TPR 1 479 - -
Chy01g00837 481 PANTHER NUCLEOPROTEIN TPR-RELATED 1 479 - -
Chy01g00837 481 Coils Coil 243 277 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy01g00837 K09291 TPR, MLP1, MLP2; nucleoprotein TPR - csv:101216510 835.484
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1185 . . . . . . . . . . . . . . . . . Bhi05g01976 . . Lac12g0024 Hepe02g0006 . . . . . . . . . . . . . . Csa07g01225 . . . . . . Bpe15g00929 . Bma03g00486 . . . . . . . . Cpe15g00913 . . . . . . . . . . . . . . . . . Chy01g00837 Cme01g01492
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004038 1 2 1 1 1 1 1 2 2 3 1 1 1 3 2 1 1 1 1 1 1 1 1 3 3 1 1 2 1 1 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy01g00837 Chy_Chr01 FPKM 14.712584 14.542565 16.264135 14.673195 12.992559 14.897324 13.442565 20.334219 18.981464 19.093422