Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy01g00844 ATGAATTCTCACGATAGAGGGATGTGCGTTCAAGGCGACTCCGGCCTCGTCCTCACCACCGACCCCAAGCCCCGCCTTCGCTGGACTGTTGAGCTTCATGAGCGCTTCGTCGATGCCGTCACTCAGCTCGGAGGCCCTGATAAGGCCACCCCAAAAACCATCATGAGAGTTATGGGTGTAAAGGGTCTTACCCTTTACCACCTCAAGAGCCATCTCCAGAAATTTAGACTGGGAAAGCAACCTCACAAGGAATTCAATGATCATTCAATTAAGGATGGTATGAGAGCTTCAGGTTTAGAACTTCATCGAAACACGGCTTCTTCATCCAATATGATCAACCGCACCATGAATGAGATGCAAATGGAGGTGCAAAGAAGATTGCATGAACAACTAGAGGTGCAAAGACACTTGCAACTGCGAATCGAGGCACAAGGGAAATACATGCAAAGTATATTAGAAAAGGCTTGTCAAACCCTAGCGGGTGAAAACATAGCAGCTTCTGGCGGCTACAAGGCCATGGCTGGGATCCCAAATAACAACAATAATCAGCAAGGCATTGCTGATATGACCGGAGCTGCCGGAGGGATCAAAGATTTTGGCTCCCCTCTTGGCTTCCCTTCTTTTCAAGACCTGAACCTCTATGGAGGCGACCAGCTTGATCTTCAGCAAAACGTGGATGGATTCATGACTCACAACGACAGCTTACTGTGCTTGGGAAAGAAGAAGTCTAGGCCGACACCAAGTACGCCAAACTACGGGGGCAGCTCGGGAAAAGGTGCGTTGGACTGGCCAGATGATCTCCGGCTGCAAGATATAGGAATGGCGCCGCCCACGTCGTGCGTAGGGCAGCAAGAAGATGATTTCAAAGGCATTGGTGGGACGCTGGTGGCCGGAAGAGATCATTTGGAGGAAATGTATGAGGCGAAGCCAGTAGTGTCGGATGATGAAGGCATGGGAGATCACAAGAAGTATGACGTCAATAACAACAACAACAATAGTAATAATTCGTCCATAAAGCTTCAGAGGCCGTCCCCCCGAAGGGTTCCCCTTTCGGTGGATAGGGCTAACCACCCTCTCATTACCACTGCTCCTCAGTCCACACATTCACCTTTTGGTTAA 1119 49.6 MNSHDRGMCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKEFNDHSIKDGMRASGLELHRNTASSSNMINRTMNEMQMEVQRRLHEQLEVQRHLQLRIEAQGKYMQSILEKACQTLAGENIAASGGYKAMAGIPNNNNNQQGIADMTGAAGGIKDFGSPLGFPSFQDLNLYGGDQLDLQQNVDGFMTHNDSLLCLGKKKSRPTPSTPNYGGSSGKGALDWPDDLRLQDIGMAPPTSCVGQQEDDFKGIGGTLVAGRDHLEEMYEAKPVVSDDEGMGDHKKYDVNNNNNNSNNSSIKLQRPSPRRVPLSVDRANHPLITTAPQSTHSPFG* 373
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 7393449 7395476 - Chy1G008440.1 Chy01g00844 218025
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy01g00844 372 MobiDBLite consensus disorder prediction 239 260 - -
Chy01g00844 372 MobiDBLite consensus disorder prediction 310 350 - -
Chy01g00844 372 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 20 80 IPR017930 -
Chy01g00844 372 MobiDBLite consensus disorder prediction 324 342 - -
Chy01g00844 372 Pfam MYB-CC type transfactor, LHEQLE motif 118 158 IPR025756 -
Chy01g00844 372 PANTHER MYB FAMILY TRANSCRIPTION FACTOR APL 1 272 - -
Chy01g00844 372 Gene3D - 22 80 - -
Chy01g00844 372 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 1 272 IPR044848 GO:0003700
Chy01g00844 372 Pfam Myb-like DNA-binding domain 26 74 IPR001005 -
Chy01g00844 372 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 23 78 IPR006447 GO:0003677
Chy01g00844 372 SUPERFAMILY Homeodomain-like 22 78 IPR009057 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g00844 Chy-Chr1:7393449 Chy04g01368 Chy-Chr4:20330154 4.62E-52 dispersed
Chy02g01741 Chy-Chr2:18297676 Chy01g00844 Chy-Chr1:7393449 7.33E-34 transposed
Chy04g01110 Chy-Chr4:17176880 Chy01g00844 Chy-Chr1:7393449 1.28E-36 transposed
Chy04g01721 Chy-Chr4:23582162 Chy01g00844 Chy-Chr1:7393449 3.25E-07 transposed
Chy06g00365 Chy-Chr6:2434197 Chy01g00844 Chy-Chr1:7393449 7.26E-71 transposed
Chy01g00844 Chy-Chr1:7393449 Chy11g01047 Chy-Chr11:14949199 1.16E-125 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17305 PF00249 Myb_DNA-binding 2.00E-06 CL0123 Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy01g00844 - - csv:101217821 724.161