Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy01g00848 ATGGATCTTACCAGACTCTGCCTTCTTCTTCTCTTTATATCCACTTGTGCAACCCATTTCTTCCCTCAATGTGATGGTAGAAGTGTTCATAGAAAGTCAAAGAAACTCCAACTGGCCAAATACTTAGATGTAATTGGTCAAAAGGTGAGCCACGTGGATGGAGCGACGAATTCCCAACCTTACGTGAGCTCACCATTCACTCTACCGCCATTCGATTCACTGCCGGACAACGCGCCACCTTACTGCTCCTATCCCCCAATTACTCCTCAGCCTCCTTCTTCGCCCTTCACCTACATTTCATCGCCGCCGCCACCTTTTTATTATCTCCCACCTCCGACCCCAACCTACGGCTTTCCTCCGTCTCCACCCAGCCTCACCCCACCTTACTATTACGAGCCCAGCCCTCCAAGCTACGTTCCGAGCCCACCCTCTCCGACGGTGTTCGTGCCGAGCCCACCCGTGTTCCAACCACCAGTGATTTACCCTCCACCGAGCGTACCACCACCTCCCCACTCCGCACCCAATATAGCCCTGTGGTGTGTGGCCAAGCCCTCTGTGCCGGACCCAATCATTCAAGAGGCCATGAACTATGCCTGCGGGACGGTGGCGGATTGCGATTCTATTCTCCCTAGCGGACCCTGTTTTATGCCCAACACACTCATAGCCCACGCTTCCTACGCCTTCAATAGTTATTGGCAGCGAACCAAGGTGGGCGGTGGCACTTGCGAATTTGGTGGTACTGCCATGCTTGTCACCGTCGATCCTAGTGACTAA 774 53.75 MDLTRLCLLLLFISTCATHFFPQCDGRSVHRKSKKLQLAKYLDVIGQKVSHVDGATNSQPYVSSPFTLPPFDSLPDNAPPYCSYPPITPQPPSSPFTYISSPPPPFYYLPPPTPTYGFPPSPPSLTPPYYYEPSPPSYVPSPPSPTVFVPSPPVFQPPVIYPPPSVPPPPHSAPNIALWCVAKPSVPDPIIQEAMNYACGTVADCDSILPSGPCFMPNTLIAHASYAFNSYWQRTKVGGGTCEFGGTAMLVTVDPSD* 258
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 7433808 7438751 - Chy1G008480.1 Chy01g00848 218029
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy01g00848 257 PANTHER CARBOHYDRATE-BINDING X8 DOMAIN SUPERFAMILY PROTEIN 6 79 - -
Chy01g00848 257 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 6 79 IPR044965 GO:0004553|GO:0005975
Chy01g00848 257 PRINTS Proline rich extensin signature 132 149 - -
Chy01g00848 257 PRINTS Proline rich extensin signature 84 105 - -
Chy01g00848 257 PRINTS Proline rich extensin signature 58 70 - -
Chy01g00848 257 PRINTS Proline rich extensin signature 112 128 - -
Chy01g00848 257 PRINTS Proline rich extensin signature 153 178 - -
Chy01g00848 257 PANTHER CARBOHYDRATE-BINDING X8 DOMAIN SUPERFAMILY PROTEIN 114 255 - -
Chy01g00848 257 Pfam X8 domain 178 249 IPR012946 -
Chy01g00848 257 SMART X8_cls 178 256 IPR012946 -
Chy01g00848 257 Gene3D - 173 257 - -
Chy01g00848 257 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 114 255 IPR044965 GO:0004553|GO:0005975
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g00848 Chy-Chr1:7433808 Chy07g00491 Chy-Chr7:3929352 9.46E-39 dispersed
Chy01g00848 Chy-Chr1:7433808 Chy12g01504 Chy-Chr12:18848579 9.19E-24 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy01g00848 - - csv:101214150 196.052