Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy01g00850 ATGACAAAGGAGACTTCAACAGATGGTACAATTCAACCGAAGGGAGGCCCGCGACGCTCAGAGAAGAATATAGAGAAGTTTGAAATCTCTGGGGCCAAAAGCACGAGAAGAAGAGCACTTGCTGATGTGAGTAATGCCCAAGGCCACTCTACTAGGCAAACACAACAAGATAGCTCCAAGCATAAGGTTTCAACTGGGACTAGAATTGGCACTGCTGGCATCAATATCTTGTTAAGGAAATCTTCGGGAAAAACGAAGAATGCGGGGGAAGCCGTTGGTGACTTGCATGCTTCAGAAAAAGGGCGTGTTAAAGATTCGAAAGGTTGTTCAATCTATGAAAGAAACAAAACAGATGGTCCCTGTTGTGCCAATACTGTGAATGCCAGGAGAATTATAAAGAGCTCTCTTGCGCAAACAAGGAGATCTTTACCAATGCTAAAGAGGATGAACCAGGCAAATGTTTCGAACCCAAAGGAAGTTACTGAGAAGCCCGAAAAGACCAATAAATCTCAAGCATGTTTTACTAAATCTGGAAAGAAAGCAGTCCAGGCAAAGAATATCAAAAGTCAGCTATGGAATAACCGAGCGAGTGATGGTTTCATTATAACGGGTCAAGCCAAAGTGGACACAAGTGCATTGTTGAAAAAGTCTAGTAAGCCCATTGCAAGGATGAAGAAGGCTACTCAAGAGGCATCAAAACCCAAATGTGCACCAGTTGCAATCAAATCAATTTCTAGTACTGCATCATCATCCAAGATTGTGGAACCTTCAGCGTCCATTCAAGGGAAGGATGCATCTGAACCTACTTGTAATCCAAGTACAAGTACGGATTTCACTGTCAAGAGAAAAGTTGGTCGTAGAAGATCGTATACATCCTTGTTGGTTGCTGGAGCAAAGTTGCTGGATAAATGTGCCGTTGATACAGAAATAGCTAACCTGCCTAGTATTGATAATGACTACGACCAAATGGAGGTTGCTGAATACGTTGAGGAGATATACGATTATTATTGGGTTACAGAGGCTCAAAGTTCATCGCTTTCAAACTACTTATCAGTACAAAAAGAAATCGCCCCCGTTATGCGAGGCATTTTGATCAACTGGTTGATTGAAGTACACTTCAAATTTGATTTGATGCCTGAAACACTATTTCTCTCTGTTACATTGTTTGATCGGTATCTCTCCCTAGTCAAAATCAAGAAGAATGAAATGCAGTTGGTTGGTCTTACTGCACTGTTATTGGCTTCAAAATATGAAGATTTCTGGCATCCTCGGGTTAAAGATCTACTTAGCATTTCAGCTGAGTCCTACTCAAGGGAGCAAATGCTACAAATGGAAGCACTCATTTTGAAGAAGTTGAAGTTTCGCTTGAACGTGCCTACTACATATGTTTTTATGTTAAGATTCCTCAAGGCTGCTCAGTCTGCTAATACTCAGCTTGAACACTTATCATTTTACTTAATTGAGCTGGCTTTGGTTGAATACGAAGCTCTGAGTTTTAGGCCGTCATTGTTATGTGCATCGGCTTTATATGTTGCACGGTGTACGCTGCGAATAAGTCCAAGCTGGACCACTCTACTAAACAAACATACACGCTACGAAACGTCCCAAATAAGAGAATGTGCTGAGATGATCTTGAAATTTCACCAATCTGCTCAATTGGGACAGCTGAAAGTCACGTATGAGAAGTACATGAAGCCTAATTTTAACGGTGTCGCAGCCATAAAGCCACTGGACAAGCTTCCTCTTTGA 1749 41.57 MTKETSTDGTIQPKGGPRRSEKNIEKFEISGAKSTRRRALADVSNAQGHSTRQTQQDSSKHKVSTGTRIGTAGINILLRKSSGKTKNAGEAVGDLHASEKGRVKDSKGCSIYERNKTDGPCCANTVNARRIIKSSLAQTRRSLPMLKRMNQANVSNPKEVTEKPEKTNKSQACFTKSGKKAVQAKNIKSQLWNNRASDGFIITGQAKVDTSALLKKSSKPIARMKKATQEASKPKCAPVAIKSISSTASSSKIVEPSASIQGKDASEPTCNPSTSTDFTVKRKVGRRRSYTSLLVAGAKLLDKCAVDTEIANLPSIDNDYDQMEVAEYVEEIYDYYWVTEAQSSSLSNYLSVQKEIAPVMRGILINWLIEVHFKFDLMPETLFLSVTLFDRYLSLVKIKKNEMQLVGLTALLLASKYEDFWHPRVKDLLSISAESYSREQMLQMEALILKKLKFRLNVPTTYVFMLRFLKAAQSANTQLEHLSFYLIELALVEYEALSFRPSLLCASALYVARCTLRISPSWTTLLNKHTRYETSQIRECAEMILKFHQSAQLGQLKVTYEKYMKPNFNGVAAIKPLDKLPL* 583
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 7454073 7459412 + Chy1G008500.1 Chy01g00850 218031
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy01g00850 582 Gene3D - 451 581 - -
Chy01g00850 582 PANTHER CYCLIN-B3-1-RELATED 113 579 - -
Chy01g00850 582 SMART Cyclin_C_2 459 577 IPR004367 -
Chy01g00850 582 SUPERFAMILY Cyclin-like 460 581 IPR036915 -
Chy01g00850 582 MobiDBLite consensus disorder prediction 18 35 - -
Chy01g00850 582 CDD CYCLIN 360 449 IPR013763 -
Chy01g00850 582 PIRSF Cyclin_A_B_D_E 134 581 IPR039361 -
Chy01g00850 582 PIRSF Cyclin_A_B_D_E 4 126 IPR039361 -
Chy01g00850 582 SUPERFAMILY Cyclin-like 322 457 IPR036915 -
Chy01g00850 582 MobiDBLite consensus disorder prediction 1 65 - -
Chy01g00850 582 CDD CYCLIN 457 545 IPR013763 -
Chy01g00850 582 ProSitePatterns Cyclins signature. 361 392 IPR006671 -
Chy01g00850 582 Gene3D - 345 450 - -
Chy01g00850 582 Pfam Cyclin, N-terminal domain 331 457 IPR006671 -
Chy01g00850 582 MobiDBLite consensus disorder prediction 256 277 - -
Chy01g00850 582 SMART cyclin_7 366 450 IPR013763 -
Chy01g00850 582 SMART cyclin_7 463 546 IPR013763 -
Chy01g00850 582 Pfam Cyclin, C-terminal domain 459 576 IPR004367 -
Chy01g00850 582 PANTHER CYCLINS 113 579 IPR039361 -
Chy01g00850 582 MobiDBLite consensus disorder prediction 40 65 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g00850 Chy-Chr1:7454073 Chy05g00192 Chy-Chr5:1517240 1.50E-83 dispersed
Chy01g00850 Chy-Chr1:7454073 Chy07g00389 Chy-Chr7:3102293 1.16E-76 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy01g00850 K21777 - csv:101213908 1056.59