Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy01g00859 ATGTCTCAATCAGTAGAGGACACGAGTCTCGACCTCATCTTTAATGGGTTACTGCTTGGGGGCAACGCCCCTCTTAAGGGACCTAACAATACTGACCCAACACAAGCTATTCTTATGGCTACCAAAAAGAGCGTCGGTACTCTCAAGGAGGCTGATTTGAAGGGAAAGAGGGTGTTCGTTAGGGTCGATCTCAACGTTCCCTTGGATGACAATTTCAACATCACCGATGACACCAGAATCCGTGCCGCTGTCCCTACCATTCAATATTTGATCAGCCATGGCGCTAGGGTCATCCTCTCCAGCCATTTGGGACGTCCAAAGGGTGTAACACCAAAATACAGCTTGAAGCCTCTTGTTCCCAGGCTTTCTGAGCTTCTTGGACTTCAGGTTGTAATGGCTAATGATTGTATTGGCGAGGAAGTTGAGAAGATGGTCGCTGAATTGCCCGAGGGAGGTGTATTGCTGCTTGAAAACGTGAGGTTTTACAAGGAGGAAGAGAAGAATGACCCCGAGTTTGCCAAGAAGTTGGCTTCTCTTGCAGATCTCTATGTTAACGATGCCTTTGGAACTGCTCACAGGGCCCACGCTTCCACTGAGGGTGTGGCTAAGTACTTGAAACCTTCTGTTGCTGGTTTCCTCATGCAGAAGGAACTTGACTACTTGGTCGGAGCTGTGTCTAATCCTAAGAGACCATTTGCTGCAATTGTTGGTGGTTCAAAGGTGTCTTCAAAGATTGGAGTGATTGAATCCTTGTTGGAAAAGGTTAATCTTCTTGTCCTTGGTGGAGGAATGATCTTTACCTTCTACAAGGCACAAGGACTTGCAGTGGGTAAATCACTTGTGGAAGAAGACAAGCTTGACCTTGCTACCTCGCTCATTGAGAAGGCAAAAGCCAAGGGTGTTTCTCTTTTGCTTCCAACCGACGTAGTGGTAGCAGATAAATTTGCTGCTGATGCTGACAGCAAGGTTGTGGCAGCATCAAGTATTCCAGATGGCTGGATGGGTTTGGATATTGGACCTGATTCTATCAAGAGTTTTGGTGAAGCTTTGGATTCTACCCAAACCATTATTTGGAATGGACCTATGGGAGTGTTCGAGTTTGAAAAGTTTGCGGCCGGAACAGAGGCTATTGCCAAGAAGTTGGCAGAGCTGAGTGGAAAGGGAGTTACCACCATAATTGGAGGAGGCGACTCTGTTGCGGCTGTTGAGAAGGTTGGACTTGCGGATAAGATGAGCCACATCTCCACTGGTGGTGGTGCCAGCTTAGAGCTTCTTGAGGGAAAAACGCTTCCCGGCGTCCTTGCTCTTGACGATGCTTGA 1320 47.65 MSQSVEDTSLDLIFNGLLLGGNAPLKGPNNTDPTQAILMATKKSVGTLKEADLKGKRVFVRVDLNVPLDDNFNITDDTRIRAAVPTIQYLISHGARVILSSHLGRPKGVTPKYSLKPLVPRLSELLGLQVVMANDCIGEEVEKMVAELPEGGVLLLENVRFYKEEEKNDPEFAKKLASLADLYVNDAFGTAHRAHASTEGVAKYLKPSVAGFLMQKELDYLVGAVSNPKRPFAAIVGGSKVSSKIGVIESLLEKVNLLVLGGGMIFTFYKAQGLAVGKSLVEEDKLDLATSLIEKAKAKGVSLLLPTDVVVADKFAADADSKVVAASSIPDGWMGLDIGPDSIKSFGEALDSTQTIIWNGPMGVFEFEKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDDA* 440
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 7557415 7562376 - Chy1G008590.1 Chy01g00859 218040

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy01g00859 439 CDD Phosphoglycerate_kinase 48 438 IPR001576 GO:0004618|GO:0006096
Chy01g00859 439 PRINTS Phosphoglycerate kinase family signature 355 380 IPR001576 GO:0004618|GO:0006096
Chy01g00859 439 PRINTS Phosphoglycerate kinase family signature 414 431 IPR001576 GO:0004618|GO:0006096
Chy01g00859 439 PRINTS Phosphoglycerate kinase family signature 391 402 IPR001576 GO:0004618|GO:0006096
Chy01g00859 439 PRINTS Phosphoglycerate kinase family signature 74 96 IPR001576 GO:0004618|GO:0006096
Chy01g00859 439 PRINTS Phosphoglycerate kinase family signature 151 166 IPR001576 GO:0004618|GO:0006096
Chy01g00859 439 PRINTS Phosphoglycerate kinase family signature 210 232 IPR001576 GO:0004618|GO:0006096
Chy01g00859 439 PRINTS Phosphoglycerate kinase family signature 179 201 IPR001576 GO:0004618|GO:0006096
Chy01g00859 439 PRINTS Phosphoglycerate kinase family signature 233 252 IPR001576 GO:0004618|GO:0006096
Chy01g00859 439 PRINTS Phosphoglycerate kinase family signature 52 68 IPR001576 GO:0004618|GO:0006096
Chy01g00859 439 PIRSF Pgk 40 439 IPR001576 GO:0004618|GO:0006096
Chy01g00859 439 Hamap Phosphoglycerate kinase [pgk]. 47 438 IPR001576 GO:0004618|GO:0006096
Chy01g00859 439 PANTHER PHOSPHOGLYCERATE KINASE 39 439 IPR001576 GO:0004618|GO:0006096
Chy01g00859 439 SUPERFAMILY Phosphoglycerate kinase 46 438 IPR036043 GO:0004618|GO:0006096
Chy01g00859 439 PANTHER PHOSPHOGLYCERATE KINASE, CYTOSOLIC 39 439 - -
Chy01g00859 439 Gene3D - 225 438 IPR015824 GO:0004618|GO:0006096
Chy01g00859 439 Gene3D - 46 222 IPR015824 GO:0004618|GO:0006096
Chy01g00859 439 Pfam Phosphoglycerate kinase 49 428 IPR001576 GO:0004618|GO:0006096
Chy01g00859 439 ProSitePatterns Phosphoglycerate kinase signature. 57 67 IPR015911 GO:0004618|GO:0006096
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy01g00859 K00927 PGK, pgk; phosphoglycerate kinase [EC:2.7.2.3] - csv:101215513 748.429
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g00859 Chy-Chr1:7557415 Chy04g02053 Chy-Chr4:26077863 7.96E-51 dispersed
Chy01g00859 Chy-Chr1:7557415 Chy11g01040 Chy-Chr11:14878150 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1132 Blo04g00465 . . . Bpe07g00471 . . . . . . . . . Sed04g3516 . . Bhi05g01998 Tan02g0042 Cmetu01g1031 Lac12g0043 Hepe02g0016 . . . . . . . . . . . . . . . . . Blo15g00633 . . . . . Bma03g00497 . . . . . . . . . . . . . . . . . . . . . . . . . . Chy01g00859 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001509 2 3 3 3 3 2 4 2 2 2 2 2 3 2 2 4 2 4 4 1 2 2 2 2 2 1 2 3 2 2 72
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy01g00859 Chy_Chr01 FPKM 5.27027 4.518182 10.971966 13.460275 9.210803 9.687954 8.223953 26.126722 20.265982 28.017273