Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy01g00873 ATGGCGTCTTCTTCTTTAGGTTTCATCTTTGTTCTTTGTGCTATTGTTTCCATCGTTAGCCACCTGATTGTTTCGTCTCAAGCTCAGAATTCAACACAACCCATCACCGATCCTGATCAAGCAAGAGCTTTGAATTCCGTATTTAGACAATGGCGAATTTCGGCACCATCAGGGGCATGGAATATAAGCGGGAATCTGTGCAGTGGGAGGGCAGTCGACACTACGACCCCCATCAATAGTAATGGAAACCTCAATCCTCTTATAAAATGTGATTGCTCAGCCAACGGCGGTGCTACTTGCCTCATTACACAACTGCACGTTTATGCAATGAATGTTGTTGGTGTACTCCCACCAGAGCTGTGGACATTGACTTCCCTCACATATCTGAATCTCGATCAAAATTTCTTGACAGGAACACTCTCTTCGTCTATTGGTGATCTCTCAGAATTGCGGACCCTGAGCCTGGGCATTAATGCGTTATCAGGGGAACTTCCCAAGGAACTTGGATCTCTTTCTAAACTGGAAATATTGGCATTTGGGTCCAACAATTTCTCTGGTCCCTTACCATCAGAACTTGGAAATCTTTCTGTGTTAAGGGAACTATACATTGATAGCTCTGGAGTTTCGGGTGGTATTCCTCCATCATTTTCACGTCTAAGAAACTTGCAGACAGTATGGGCATCAGACAATGAATTCACTGGCAGAATACCTGATTTCATCGGGAACTGGACAAGGCTCACATCTTTGAGGTTTCAAGGAAACTCTTTTACAGGTCCTATACCATCGACATTTTCAAACTTGACATCTTTGACTGAGTTGAGAATAGGTGATTTATCCAATGGGAGCTCTTCTCTGGCATTCATCAGTAAAATTACATCTCTAACTATCCTGGTGCTGAGAAATAATAATATTACTGGTTCAATTCCATCCAACATTGGAGAATTTCGTAGACTTGCCCAGCTGGACTTGAGCTTCAACAACTTGACAGGAGAGATTCCAAGCTCACTTTTCAGTTTGAGCTCACTGTCACACTTGATCCTTGGAAATAATAAGTTAAATGGGACCCTACCTACACAGAAGAGTGAATCACTTCTAAATATAGACTTGTCATATAATGATTTATCAGGGAGCTTTCCTGATTGGATCGACCAGCAAAACTTACAGCTAAATTTAGTTGCCAACAATTTCACAATTGAAAGTGGCAGTATCAGGGGTTTGCCTGGATTGAATTGTCTTCAACGTAACTTTCCTTGTAATCGAGGCCGTCCAATATATTCTGATTTTGGGATTAAGTGTGGAGGTCCACAAATCAGAAGTTCATCAGGGGTTTTGTTTGAAAGGGATAATGAGGCCCTCGGTCCTGCTACGTACTTTGTCACTGAGTCACAGAGGTGGGCCGTTAGTAATACTGGATACTTTACGGGGACCAGCAATCCTAATTACACAGCCAATACGCTGGCTCAATTCCCGAACACCCTCAACCCAGAACTTTTTCAGACACAGCGAATATCTGCTTCATCACTGAGATACTACGGACTAGGGCTTGAGAATGGCAACTACACTGTGAACCTTCATTTTGCAGAAATAGCTTTCCCAGATTCAAATACATGGCAAAGCCATGGGAGGCGTCTCTTTGATATATATATACAGGGAAATCGTGTGTTACAGAATTTTGATATTAGAAAGGAGGCAGGTGGGTCTTTCCTTGCTGTCAGAAGGAATTTTACTGCTGAAGTTACAGAAAACTTCCTGGAAATTCATCTCTTTTGGGCGGGAAAAGGCACTTGCTGCATACCCCGTCAGGGTGATTTTGGACCTGCTGTTTCAGCCATCAGCGCTACCCCAAATTTTGTACCAACTGTCAGTAACGTACCTCCAAGTACTAAGGCGACTAGAACAGGCCTAATTGTAGGGCTTGTTGTTGGTTTAGGATCTGTTTTCTTTCTGATTGTCGGCGCAGTATTCTTTGTTGTTCAGAGAAGGAAAAGGCGTCGTGCCTATGAAGATGAAGAGCTCCTAGGAATAGACACTAGACCGTACACTTTTAGTTATTCTGAACTAAGGGGTGCTACAAATGACTTTAATTCATCCAACAAACTTGGCGAAGGAGGATTTGGACCTGTTTACAAGGGAACATTAAATGATGGAAGAGTGGTTGCTGTGAAGCAACTTTCAGTGGCATCCCACCAAGGAAAGAGCCAGTTTGTTGCTGAGATTGCTACAATATCTGCAGTGCAACATCGTAACCTTGTGAAATTATATGGATGTTGCATTGAGGCCGATAAACGTCTCCTTGTTTATGAGTTTCTTGAGAACAAGAGTCTTGACCAAGCATTATTTGGGCAAAAACATTTCGTTATTGATTGGCCAACACGGTTTGAGATATGCGTGGGTGTCGCAAGGGGTCTCACTTACCTTCATGAGGAATCGAGACTTCGCATAGTGCACAGAGATGTTAAGGCGAGTAACATCCTGCTTGATGGTAATCTGATTCCCAAAATTTCAGATTTTGGGTTAGCCAAACTTTACGATGACAAAAAGACTCATATAAGCACCCGTGTTGCTGGTACAATTGGTTATCTTGCACCCGAGTATGCCATGCGTGGCCACCTTACGGAGAAGGCTGATGTCTTCGGATTTGGTGTTGTGGCTCTTGAAATTGTTAGTGGAAGGCCAAATTCAGACCCAAGCTTAGATCAAGACAAAATTTATCTTCTCGAATGGGCATGGTACCTCCACGAAAACAACTGTGAACTTGAGATGGTGGATTCTGCATTATCGGAGTTCAGCAAGGAGAAAGTAAAAAGGGTAATTGGTGTAGCTCTTCTGTGCACTCAAACATCCCCAGGTCTTCGACCATCGATGTCCCGCGTGGTGGCAATGCTGAGTGGAGACATCGAAGTGGCCACTGTTACTTCCAAACCAGGATACCTGACAGATTGGAAATTTGAGGATATTACAAGCTTTATAGATACTCCATCAACTGAAGAACCTGATACCGGCCGTTATACATCTACAAGTTCAAGTATTATTGATACGAAGCGCTCGCCAGCCAACCCTTCTGAACCAATGCTTCGTGGATTATTAGGAGAGGGTAGATGA 3102 43.2 MASSSLGFIFVLCAIVSIVSHLIVSSQAQNSTQPITDPDQARALNSVFRQWRISAPSGAWNISGNLCSGRAVDTTTPINSNGNLNPLIKCDCSANGGATCLITQLHVYAMNVVGVLPPELWTLTSLTYLNLDQNFLTGTLSSSIGDLSELRTLSLGINALSGELPKELGSLSKLEILAFGSNNFSGPLPSELGNLSVLRELYIDSSGVSGGIPPSFSRLRNLQTVWASDNEFTGRIPDFIGNWTRLTSLRFQGNSFTGPIPSTFSNLTSLTELRIGDLSNGSSSLAFISKITSLTILVLRNNNITGSIPSNIGEFRRLAQLDLSFNNLTGEIPSSLFSLSSLSHLILGNNKLNGTLPTQKSESLLNIDLSYNDLSGSFPDWIDQQNLQLNLVANNFTIESGSIRGLPGLNCLQRNFPCNRGRPIYSDFGIKCGGPQIRSSSGVLFERDNEALGPATYFVTESQRWAVSNTGYFTGTSNPNYTANTLAQFPNTLNPELFQTQRISASSLRYYGLGLENGNYTVNLHFAEIAFPDSNTWQSHGRRLFDIYIQGNRVLQNFDIRKEAGGSFLAVRRNFTAEVTENFLEIHLFWAGKGTCCIPRQGDFGPAVSAISATPNFVPTVSNVPPSTKATRTGLIVGLVVGLGSVFFLIVGAVFFVVQRRKRRRAYEDEELLGIDTRPYTFSYSELRGATNDFNSSNKLGEGGFGPVYKGTLNDGRVVAVKQLSVASHQGKSQFVAEIATISAVQHRNLVKLYGCCIEADKRLLVYEFLENKSLDQALFGQKHFVIDWPTRFEICVGVARGLTYLHEESRLRIVHRDVKASNILLDGNLIPKISDFGLAKLYDDKKTHISTRVAGTIGYLAPEYAMRGHLTEKADVFGFGVVALEIVSGRPNSDPSLDQDKIYLLEWAWYLHENNCELEMVDSALSEFSKEKVKRVIGVALLCTQTSPGLRPSMSRVVAMLSGDIEVATVTSKPGYLTDWKFEDITSFIDTPSTEEPDTGRYTSTSSSIIDTKRSPANPSEPMLRGLLGEGR* 1034
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 7804856 7814819 + Chy1G008730.1 Chy01g00873 218054
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy01g00873 1033 CDD STKc_IRAK 700 962 - -
Chy01g00873 1033 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 139 1015 - -
Chy01g00873 1033 SUPERFAMILY L domain-like 102 412 - -
Chy01g00873 1033 MobiDBLite consensus disorder prediction 992 1016 - -
Chy01g00873 1033 ProSitePatterns Serine/Threonine protein kinases active-site signature. 814 826 IPR008271 GO:0004672|GO:0006468
Chy01g00873 1033 Gene3D Phosphorylase Kinase; domain 1 655 769 - -
Chy01g00873 1033 ProSiteProfiles Protein kinase domain profile. 694 968 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy01g00873 1033 SUPERFAMILY Protein kinase-like (PK-like) 677 996 IPR011009 -
Chy01g00873 1033 Pfam Protein tyrosine and serine/threonine kinase 697 961 IPR001245 GO:0004672|GO:0006468
Chy01g00873 1033 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 139 1015 - -
Chy01g00873 1033 SMART serkin_6 694 962 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy01g00873 1033 Gene3D Ribonuclease Inhibitor 197 415 IPR032675 -
Chy01g00873 1033 MobiDBLite consensus disorder prediction 992 1033 - -
Chy01g00873 1033 Pfam Malectin domain 428 611 IPR021720 -
Chy01g00873 1033 Pfam Leucine rich repeat 293 352 IPR001611 GO:0005515
Chy01g00873 1033 Gene3D Transferase(Phosphotransferase) domain 1 770 974 - -
Chy01g00873 1033 Gene3D Ribonuclease Inhibitor 61 196 IPR032675 -
Chy01g00873 1033 Gene3D - 428 615 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g00873 Chy-Chr1:7804856 Chy10g00188 Chy-Chr10:4643757 0 dispersed
Chy02g02273 Chy-Chr2:26804902 Chy01g00873 Chy-Chr1:7804856 7.82E-62 dispersed
Chy02g02274 Chy-Chr2:26810457 Chy01g00873 Chy-Chr1:7804856 6.94E-14 dispersed
Chy12g00659 Chy-Chr12:9466825 Chy01g00873 Chy-Chr1:7804856 2.73E-10 dispersed
Chy01g00873 Chy-Chr1:7804856 Chy07g00003 Chy-Chr7:47337 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
70984 PF07714 PK_Tyr_Ser-Thr 1.60E-45 CL0016 Chy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy01g00873 - - csv:101212465 1925.6