Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Chy01g00873 | ATGGCGTCTTCTTCTTTAGGTTTCATCTTTGTTCTTTGTGCTATTGTTTCCATCGTTAGCCACCTGATTGTTTCGTCTCAAGCTCAGAATTCAACACAACCCATCACCGATCCTGATCAAGCAAGAGCTTTGAATTCCGTATTTAGACAATGGCGAATTTCGGCACCATCAGGGGCATGGAATATAAGCGGGAATCTGTGCAGTGGGAGGGCAGTCGACACTACGACCCCCATCAATAGTAATGGAAACCTCAATCCTCTTATAAAATGTGATTGCTCAGCCAACGGCGGTGCTACTTGCCTCATTACACAACTGCACGTTTATGCAATGAATGTTGTTGGTGTACTCCCACCAGAGCTGTGGACATTGACTTCCCTCACATATCTGAATCTCGATCAAAATTTCTTGACAGGAACACTCTCTTCGTCTATTGGTGATCTCTCAGAATTGCGGACCCTGAGCCTGGGCATTAATGCGTTATCAGGGGAACTTCCCAAGGAACTTGGATCTCTTTCTAAACTGGAAATATTGGCATTTGGGTCCAACAATTTCTCTGGTCCCTTACCATCAGAACTTGGAAATCTTTCTGTGTTAAGGGAACTATACATTGATAGCTCTGGAGTTTCGGGTGGTATTCCTCCATCATTTTCACGTCTAAGAAACTTGCAGACAGTATGGGCATCAGACAATGAATTCACTGGCAGAATACCTGATTTCATCGGGAACTGGACAAGGCTCACATCTTTGAGGTTTCAAGGAAACTCTTTTACAGGTCCTATACCATCGACATTTTCAAACTTGACATCTTTGACTGAGTTGAGAATAGGTGATTTATCCAATGGGAGCTCTTCTCTGGCATTCATCAGTAAAATTACATCTCTAACTATCCTGGTGCTGAGAAATAATAATATTACTGGTTCAATTCCATCCAACATTGGAGAATTTCGTAGACTTGCCCAGCTGGACTTGAGCTTCAACAACTTGACAGGAGAGATTCCAAGCTCACTTTTCAGTTTGAGCTCACTGTCACACTTGATCCTTGGAAATAATAAGTTAAATGGGACCCTACCTACACAGAAGAGTGAATCACTTCTAAATATAGACTTGTCATATAATGATTTATCAGGGAGCTTTCCTGATTGGATCGACCAGCAAAACTTACAGCTAAATTTAGTTGCCAACAATTTCACAATTGAAAGTGGCAGTATCAGGGGTTTGCCTGGATTGAATTGTCTTCAACGTAACTTTCCTTGTAATCGAGGCCGTCCAATATATTCTGATTTTGGGATTAAGTGTGGAGGTCCACAAATCAGAAGTTCATCAGGGGTTTTGTTTGAAAGGGATAATGAGGCCCTCGGTCCTGCTACGTACTTTGTCACTGAGTCACAGAGGTGGGCCGTTAGTAATACTGGATACTTTACGGGGACCAGCAATCCTAATTACACAGCCAATACGCTGGCTCAATTCCCGAACACCCTCAACCCAGAACTTTTTCAGACACAGCGAATATCTGCTTCATCACTGAGATACTACGGACTAGGGCTTGAGAATGGCAACTACACTGTGAACCTTCATTTTGCAGAAATAGCTTTCCCAGATTCAAATACATGGCAAAGCCATGGGAGGCGTCTCTTTGATATATATATACAGGGAAATCGTGTGTTACAGAATTTTGATATTAGAAAGGAGGCAGGTGGGTCTTTCCTTGCTGTCAGAAGGAATTTTACTGCTGAAGTTACAGAAAACTTCCTGGAAATTCATCTCTTTTGGGCGGGAAAAGGCACTTGCTGCATACCCCGTCAGGGTGATTTTGGACCTGCTGTTTCAGCCATCAGCGCTACCCCAAATTTTGTACCAACTGTCAGTAACGTACCTCCAAGTACTAAGGCGACTAGAACAGGCCTAATTGTAGGGCTTGTTGTTGGTTTAGGATCTGTTTTCTTTCTGATTGTCGGCGCAGTATTCTTTGTTGTTCAGAGAAGGAAAAGGCGTCGTGCCTATGAAGATGAAGAGCTCCTAGGAATAGACACTAGACCGTACACTTTTAGTTATTCTGAACTAAGGGGTGCTACAAATGACTTTAATTCATCCAACAAACTTGGCGAAGGAGGATTTGGACCTGTTTACAAGGGAACATTAAATGATGGAAGAGTGGTTGCTGTGAAGCAACTTTCAGTGGCATCCCACCAAGGAAAGAGCCAGTTTGTTGCTGAGATTGCTACAATATCTGCAGTGCAACATCGTAACCTTGTGAAATTATATGGATGTTGCATTGAGGCCGATAAACGTCTCCTTGTTTATGAGTTTCTTGAGAACAAGAGTCTTGACCAAGCATTATTTGGGCAAAAACATTTCGTTATTGATTGGCCAACACGGTTTGAGATATGCGTGGGTGTCGCAAGGGGTCTCACTTACCTTCATGAGGAATCGAGACTTCGCATAGTGCACAGAGATGTTAAGGCGAGTAACATCCTGCTTGATGGTAATCTGATTCCCAAAATTTCAGATTTTGGGTTAGCCAAACTTTACGATGACAAAAAGACTCATATAAGCACCCGTGTTGCTGGTACAATTGGTTATCTTGCACCCGAGTATGCCATGCGTGGCCACCTTACGGAGAAGGCTGATGTCTTCGGATTTGGTGTTGTGGCTCTTGAAATTGTTAGTGGAAGGCCAAATTCAGACCCAAGCTTAGATCAAGACAAAATTTATCTTCTCGAATGGGCATGGTACCTCCACGAAAACAACTGTGAACTTGAGATGGTGGATTCTGCATTATCGGAGTTCAGCAAGGAGAAAGTAAAAAGGGTAATTGGTGTAGCTCTTCTGTGCACTCAAACATCCCCAGGTCTTCGACCATCGATGTCCCGCGTGGTGGCAATGCTGAGTGGAGACATCGAAGTGGCCACTGTTACTTCCAAACCAGGATACCTGACAGATTGGAAATTTGAGGATATTACAAGCTTTATAGATACTCCATCAACTGAAGAACCTGATACCGGCCGTTATACATCTACAAGTTCAAGTATTATTGATACGAAGCGCTCGCCAGCCAACCCTTCTGAACCAATGCTTCGTGGATTATTAGGAGAGGGTAGATGA | 3102 | 43.2 | MASSSLGFIFVLCAIVSIVSHLIVSSQAQNSTQPITDPDQARALNSVFRQWRISAPSGAWNISGNLCSGRAVDTTTPINSNGNLNPLIKCDCSANGGATCLITQLHVYAMNVVGVLPPELWTLTSLTYLNLDQNFLTGTLSSSIGDLSELRTLSLGINALSGELPKELGSLSKLEILAFGSNNFSGPLPSELGNLSVLRELYIDSSGVSGGIPPSFSRLRNLQTVWASDNEFTGRIPDFIGNWTRLTSLRFQGNSFTGPIPSTFSNLTSLTELRIGDLSNGSSSLAFISKITSLTILVLRNNNITGSIPSNIGEFRRLAQLDLSFNNLTGEIPSSLFSLSSLSHLILGNNKLNGTLPTQKSESLLNIDLSYNDLSGSFPDWIDQQNLQLNLVANNFTIESGSIRGLPGLNCLQRNFPCNRGRPIYSDFGIKCGGPQIRSSSGVLFERDNEALGPATYFVTESQRWAVSNTGYFTGTSNPNYTANTLAQFPNTLNPELFQTQRISASSLRYYGLGLENGNYTVNLHFAEIAFPDSNTWQSHGRRLFDIYIQGNRVLQNFDIRKEAGGSFLAVRRNFTAEVTENFLEIHLFWAGKGTCCIPRQGDFGPAVSAISATPNFVPTVSNVPPSTKATRTGLIVGLVVGLGSVFFLIVGAVFFVVQRRKRRRAYEDEELLGIDTRPYTFSYSELRGATNDFNSSNKLGEGGFGPVYKGTLNDGRVVAVKQLSVASHQGKSQFVAEIATISAVQHRNLVKLYGCCIEADKRLLVYEFLENKSLDQALFGQKHFVIDWPTRFEICVGVARGLTYLHEESRLRIVHRDVKASNILLDGNLIPKISDFGLAKLYDDKKTHISTRVAGTIGYLAPEYAMRGHLTEKADVFGFGVVALEIVSGRPNSDPSLDQDKIYLLEWAWYLHENNCELEMVDSALSEFSKEKVKRVIGVALLCTQTSPGLRPSMSRVVAMLSGDIEVATVTSKPGYLTDWKFEDITSFIDTPSTEEPDTGRYTSTSSSIIDTKRSPANPSEPMLRGLLGEGR* | 1034 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 7804856 | 7814819 | + | Chy1G008730.1 | Chy01g00873 | 218054 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Chy01g00873 | 1033 | CDD | STKc_IRAK | 700 | 962 | - | - | |
Chy01g00873 | 1033 | PANTHER | PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA | 139 | 1015 | - | - | |
Chy01g00873 | 1033 | SUPERFAMILY | L domain-like | 102 | 412 | - | - | |
Chy01g00873 | 1033 | MobiDBLite | consensus disorder prediction | 992 | 1016 | - | - | |
Chy01g00873 | 1033 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 814 | 826 | IPR008271 | GO:0004672|GO:0006468 | |
Chy01g00873 | 1033 | Gene3D | Phosphorylase Kinase; domain 1 | 655 | 769 | - | - | |
Chy01g00873 | 1033 | ProSiteProfiles | Protein kinase domain profile. | 694 | 968 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Chy01g00873 | 1033 | SUPERFAMILY | Protein kinase-like (PK-like) | 677 | 996 | IPR011009 | - | |
Chy01g00873 | 1033 | Pfam | Protein tyrosine and serine/threonine kinase | 697 | 961 | IPR001245 | GO:0004672|GO:0006468 | |
Chy01g00873 | 1033 | PANTHER | LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED | 139 | 1015 | - | - | |
Chy01g00873 | 1033 | SMART | serkin_6 | 694 | 962 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Chy01g00873 | 1033 | Gene3D | Ribonuclease Inhibitor | 197 | 415 | IPR032675 | - | |
Chy01g00873 | 1033 | MobiDBLite | consensus disorder prediction | 992 | 1033 | - | - | |
Chy01g00873 | 1033 | Pfam | Malectin domain | 428 | 611 | IPR021720 | - | |
Chy01g00873 | 1033 | Pfam | Leucine rich repeat | 293 | 352 | IPR001611 | GO:0005515 | |
Chy01g00873 | 1033 | Gene3D | Transferase(Phosphotransferase) domain 1 | 770 | 974 | - | - | |
Chy01g00873 | 1033 | Gene3D | Ribonuclease Inhibitor | 61 | 196 | IPR032675 | - | |
Chy01g00873 | 1033 | Gene3D | - | 428 | 615 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Chy01g00873 | Chy-Chr1:7804856 | Chy10g00188 | Chy-Chr10:4643757 | 0 | dispersed | |
Chy02g02273 | Chy-Chr2:26804902 | Chy01g00873 | Chy-Chr1:7804856 | 7.82E-62 | dispersed | |
Chy02g02274 | Chy-Chr2:26810457 | Chy01g00873 | Chy-Chr1:7804856 | 6.94E-14 | dispersed | |
Chy12g00659 | Chy-Chr12:9466825 | Chy01g00873 | Chy-Chr1:7804856 | 2.73E-10 | dispersed | |
Chy01g00873 | Chy-Chr1:7804856 | Chy07g00003 | Chy-Chr7:47337 | 0 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
70984 | PF07714 | PK_Tyr_Ser-Thr | 1.60E-45 | CL0016 | Chy | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Chy01g00873 | - | - | csv:101212465 | 1925.6 |