Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy01g00875 ATGTCCGTACTGATTGTAACCAGTCTTGGGGACATTGTGATCGACCTACACACCGATATCTGCCCCTTGACTTCCAAGAATTTCTTGAAGCTCTGCAAAATTAAGTATTACAATGGGTGTCTGTTTCATACAATACAGAAGGACTTTACTGCTCAGACTGGTGACCCCACTGGCACGGGGACTGGTGGCGACTCAATCTATAAATTTCTCTATGGGGACCAGGCTCGATTTTTCAGTGATGAAATTCGTCTTGATTTAAAGCATTCCAAGACCGGCACTGTTGCAATGGCCAGTGCTGGGGAAAATCTTAATGCTTCTCAGTTTTATTTTACGTTGCGTGATGATCTTGAGTACCTTGATGGCAAGCACACTGTCTTTGGAGAGGTTGCTGAAGGACTAGATACCTTGACTAGGATTAATGAAGCTTATGCAGATGAGAAGGGCAGGCCATACAAAAATATTCGAATCAAGCATACTTATATCCTGGATGATCCATTTGATGATCCGCCCCAGTTAGCTGAGCTCATTCCAGATTCTTCTCCTGATGGGAAACCAAAAGATGAGGTTGTTGATGAGGTGCGACTAGAAGATGATTGGGTGCCACTGGATGAGCAATTAGGTGCAGAAGAACTTGAGGAGGTTTTTCGAGCGAAGGAAGCTCACTCCAGAGCTGTCGTGCTTGAAACTATTGGAGATATTCCTGATGCTGAGATAAAGCCTCCCGATAACGTGTTATTTGTTTGTAAACTGAATCCAGTCACAGAAGATGAGGACTTGCATACAATCTTCTCTCGTTTTGGCACTGTATTATCGGCTGAAGTCATCCGTGATTACAAAACTGGAGATAGTTTATGCTATGCCTTCATAGAGTTTGAGACCAAAGAGGCATGTGAACAAGCATATTTTAAGATGGACAATGCTCTGATTGATGATAGAAGGATACATGTGGATTTCAGTCAAAGTGTTGCAAAACTTTGGTCCCAATACCGACGCAAAGATTACACAACAGATAAAGGTGGAGGTTGCTTTAAATGTGGCGCTCTTGACCATATGGCTAGGGATTGCACCGGTGGTTCTACAAAGTTCATCTTGAAGGATGATAACGTACAGCATGGTGGAGATGAATCAAGGTATGACTTTGTTTTCGATGAGGACAATGGAAATAACAATCGGAAAGAAAGGAGACGTCGGGATCATGATAATGATAGGCATGTTGAGAGGCCAAATGCTAGGAACCCAAGCCCCGCTGGGCATGAGCGATATGGAGAAAAGAAGGGTGCAAGTGATAGGCATGAATCAAATGACAGAAATAGATTCAGAGAGAGAGAGATGCATCGAGAAAATAAGGACAGACAAACCCGTGGAGACAGAGATGATTTTGAAGATCGAAGAGACCATGAAAGACAAAGAAAGAGACAGAATGACAGAGATGACCACAAGAAAAAGGAGTTGGATTATAGAAAAAGATCTTCAAATGATCATGACGCGTATGGCAACCGGGATTATGAGGCCAATAGAAACAAAAGTGGAAGGGAATATAGTGACAGGTCAGAGAAGAGGAAGGATGGGGAGTTTTATGGTAGAAGGCATGCAGATAAGTGTAGCCATGAAGAGAAAAGGCATGATATTCGAGAATATAGGAAGGATGAACGAGGTTACGGAAAAAGAAGTTTTGACAGTGAAAAAGCTGAGATGAAAGATGGGCCGCGTTATAAAAAAAGATATACAGATGATGATGGTTACAAGGACAGGAGAGAAGAGCGAGAACCCAGAAGACAATTAAACTATCTCCTGTAG 1797 42.52 MSVLIVTSLGDIVIDLHTDICPLTSKNFLKLCKIKYYNGCLFHTIQKDFTAQTGDPTGTGTGGDSIYKFLYGDQARFFSDEIRLDLKHSKTGTVAMASAGENLNASQFYFTLRDDLEYLDGKHTVFGEVAEGLDTLTRINEAYADEKGRPYKNIRIKHTYILDDPFDDPPQLAELIPDSSPDGKPKDEVVDEVRLEDDWVPLDEQLGAEELEEVFRAKEAHSRAVVLETIGDIPDAEIKPPDNVLFVCKLNPVTEDEDLHTIFSRFGTVLSAEVIRDYKTGDSLCYAFIEFETKEACEQAYFKMDNALIDDRRIHVDFSQSVAKLWSQYRRKDYTTDKGGGCFKCGALDHMARDCTGGSTKFILKDDNVQHGGDESRYDFVFDEDNGNNNRKERRRRDHDNDRHVERPNARNPSPAGHERYGEKKGASDRHESNDRNRFREREMHRENKDRQTRGDRDDFEDRRDHERQRKRQNDRDDHKKKELDYRKRSSNDHDAYGNRDYEANRNKSGREYSDRSEKRKDGEFYGRRHADKCSHEEKRHDIREYRKDERGYGKRSFDSEKAEMKDGPRYKKRYTDDDGYKDRREEREPRRQLNYLL* 599
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 7834492 7840116 - Chy1G008750.1 Chy01g00875 218056
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy01g00875 598 Gene3D - 196 325 IPR012677 -
Chy01g00875 598 MobiDBLite consensus disorder prediction 375 409 - -
Chy01g00875 598 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 7 161 IPR002130 GO:0000413|GO:0003755
Chy01g00875 598 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-LIKE 4 1 494 IPR035542 -
Chy01g00875 598 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 245 315 IPR000504 GO:0003723
Chy01g00875 598 MobiDBLite consensus disorder prediction 417 598 - -
Chy01g00875 598 ProSiteProfiles Zinc finger CCHC-type profile. 342 355 IPR001878 GO:0003676|GO:0008270
Chy01g00875 598 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 42 54 IPR002130 GO:0000413|GO:0003755
Chy01g00875 598 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 92 107 IPR002130 GO:0000413|GO:0003755
Chy01g00875 598 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 121 136 IPR002130 GO:0000413|GO:0003755
Chy01g00875 598 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 16 31 IPR002130 GO:0000413|GO:0003755
Chy01g00875 598 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 243 321 IPR000504 GO:0003723
Chy01g00875 598 CDD cyclophilin_RRM 4 169 IPR035538 -
Chy01g00875 598 Pfam Zinc knuckle 341 356 IPR001878 GO:0003676|GO:0008270
Chy01g00875 598 SUPERFAMILY RNA-binding domain, RBD 229 331 IPR035979 GO:0003676
Chy01g00875 598 SUPERFAMILY Cyclophilin-like 1 178 IPR029000 -
Chy01g00875 598 MobiDBLite consensus disorder prediction 375 598 - -
Chy01g00875 598 CDD RRM_PPIL4 240 322 - -
Chy01g00875 598 SMART c2hcfinal6 341 357 IPR001878 GO:0003676|GO:0008270
Chy01g00875 598 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 4 159 IPR002130 GO:0000413|GO:0003755
Chy01g00875 598 Gene3D - 1 172 IPR029000 -
Chy01g00875 598 SMART rrm1_1 244 317 IPR000504 GO:0003723
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g00875 Chy-Chr1:7834492 Chy02g00840 Chy-Chr2:5339778 4.13E-33 dispersed
Chy06g00825 Chy-Chr6:5819041 Chy01g00875 Chy-Chr1:7834492 3.04E-11 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy01g00875 K12735 - csv:101212221 1145.57