Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy01g00877 ATGGCATCGTCGGAGATGATGATGATGATGAATGGGAGCTGCAAAAAGGGGAATGGTGCAGCCGCGCCGTGCGCTGCGTGCAAGCTTTTGCGGCGGCGGTGTGCTCAAGACTGTGTTTTTGCTCCTTATTTTCCGGCGGATCATCCCCACAAATTCTCCAGTGTTCACAAGGTCTTTGGTGCTAGTAATGTCAGCAAATTGTTGCAGGAGTTGCCAGAGCAGCAACGGAGCGATGCAGTGAGTTCGATGGTATATGAGGCAAACGCGAGGATTCGAGATCCGGTGTACGGGTGCGTGGGAACAATATCATGTCTACAACAGCAAGTGGATGCATTGCAGCAACAATTAGCAATAACACAGGCCCAACTGGTTCAATTGAAAATGGGGCAATTCACAACAACATCACAATCATCATCTAGTACAGATGACCTCCTTCCTCCTCCGCCCAATATCAATGTGGCCTCATCCTCATCCTTATGGTCTTGCTAG 489 49.49 MASSEMMMMMNGSCKKGNGAAAPCAACKLLRRRCAQDCVFAPYFPADHPHKFSSVHKVFGASNVSKLLQELPEQQRSDAVSSMVYEANARIRDPVYGCVGTISCLQQQVDALQQQLAITQAQLVQLKMGQFTTTSQSSSSTDDLLPPPPNINVASSSSLWSC* 163
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 7871667 7874127 - Chy1G008770.1 Chy01g00877 218058
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy01g00877 162 Pfam Lateral organ boundaries (LOB) domain 23 120 IPR004883 -
Chy01g00877 162 ProSiteProfiles LOB domain profile. 22 123 IPR004883 -
Chy01g00877 162 PANTHER LOB DOMAIN-CONTAINING PROTEIN 3 13 140 - -
Chy01g00877 162 MobiDBLite consensus disorder prediction 135 162 - -
Chy01g00877 162 Coils Coil 102 122 - -
Chy01g00877 162 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 13 140 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g00877 Chy-Chr1:7871667 Chy10g00333 Chy-Chr10:8489242 4.79E-49 dispersed
Chy01g00877 Chy-Chr1:7871667 Chy11g01024 Chy-Chr11:14506810 1.12E-68 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17307 PF03195 LOB 4.50E-43 No_clan Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy01g00877 - - csv:101213100 283.108