Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy01g00887 ATGTCATCTGGAAGTAGTAGTACTTTGAATACAGAATTGTCAAAGAAAACACCCTTCCTTGGTTTGTCCCTATGGGTTTTGATCTGCTTATGTGTTGGTGCATTTATTGTTTTGATTCTTGGTATCTTATCTGTATGGGTGATGTTTCGAAGAAAAACAAGGAGATCCCCAGAAAACTTCTCTACTTCTCAAATACCAAATATCTCAAAGGATATTAAGGTGGACAGAATTGCTACTCAATCCGCCCACCACAATCATCTTGAGAGCCTTTATATTTCTATTAATGATAAATCAAGTGAGAAGAACTCAGAGAAGATGATTGGTCATTTGGGTATGAGCAAGTCTAGTGATCCTGATAACATAAGCCAATGCAGCTCCAATTATCATCATGAAAGAGTTTTCAGCTCACATTCAGGAGAAGAAGGAAGCTCTGGTACTGTTAGAAAACAGTCTTCAATGTCATATGGAGGGTATGGAGGCCTTGTGACTGCCTCTCCTCTTGTTGGCTTGCCTGAAATTTCACATCTTGGTTGGGGTCACTGGTTTACACTCAGGGATCTAGAATTTGCCACAAATCGTTTTGCTGCAGACAATGTGCTTGGTGAAGGGGGTTATGGGGTTGTCTATAAAGGCAGACTGATAAATGGAACTGAGGTTGCTGTGAAGAAACTTCTCAATAATCTGGGACAAGCAGAGAAAGAATTTAGAGTTGAAGTGGAGGCCATTGGTCATGTAAGACACAAGAATCTCGTCCGGCTCCTTGGCTATTGCATAGAAGGAGTTCATAGGATGCTGGTCTATGAATATGTGAACAATGGGAACTTAGAGCAATGGTTACATGGGGCTATGCGACAACATGGCACCCTGACTTGGGAGGCCCGAATGAAGGTGCTTCTTGGCACTGCCAAGGCGCTAGCATATTTACATGAAGCAATTGAACCAAAGGTTGTTCACAGAGACATAAAATCGAGCAATATCTTAATCGATGATGAATTTAATGCAAAGGTTTCAGATTTTGGATTGGCCAAACTTTTGGATGCAGGAGAGAGTCACATCACGACTAGAGTTATGGGAACATTTGGGTATGTGGCGCCAGAATATGCTAACACCGGCTTGTTAAATGAGAAGAGCGACATCTATAGCTTTGGTGTTCTCCTTCTAGAAGCAATCACAGGAAGGGATCCGGTGGACTATGGCCGTCCTGCTAATGAGGTTAATCTTGTTGAGTGGTTAAAAGTGATGGTTGGCACAAGGAGAGCTGAGGAAGTTATTGACCCAAGTCTTGAAACTAAGCCCAGTACTCGAGCTTTGAAACGTGCCCTTCTGATTGCACTTAGGTGTGTGGATCCTGAGGCAGATAAGAGACCAAAAATGACCCAAGTTGTTAGGATGCTTGAAGCTGATGACTACCCATCTCGTGAGGATCGGCGGAGCCAAAAGAGCAGCACAGCAAACTCAGAGATTGAATCCAGTCAAGGCGAGATTGGAAGTAAACCAGGGGAATCACAAAGCAAACCAGTAAACGCATGA 1530 43.01 MSSGSSSTLNTELSKKTPFLGLSLWVLICLCVGAFIVLILGILSVWVMFRRKTRRSPENFSTSQIPNISKDIKVDRIATQSAHHNHLESLYISINDKSSEKNSEKMIGHLGMSKSSDPDNISQCSSNYHHERVFSSHSGEEGSSGTVRKQSSMSYGGYGGLVTASPLVGLPEISHLGWGHWFTLRDLEFATNRFAADNVLGEGGYGVVYKGRLINGTEVAVKKLLNNLGQAEKEFRVEVEAIGHVRHKNLVRLLGYCIEGVHRMLVYEYVNNGNLEQWLHGAMRQHGTLTWEARMKVLLGTAKALAYLHEAIEPKVVHRDIKSSNILIDDEFNAKVSDFGLAKLLDAGESHITTRVMGTFGYVAPEYANTGLLNEKSDIYSFGVLLLEAITGRDPVDYGRPANEVNLVEWLKVMVGTRRAEEVIDPSLETKPSTRALKRALLIALRCVDPEADKRPKMTQVVRMLEADDYPSREDRRSQKSSTANSEIESSQGEIGSKPGESQSKPVNA* 510
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8089751 8092734 + Chy1G008870.1 Chy01g00887 218068
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy01g00887 509 ProSitePatterns Serine/Threonine protein kinases active-site signature. 316 328 IPR008271 GO:0004672|GO:0006468
Chy01g00887 509 ProSitePatterns Protein kinases ATP-binding region signature. 200 223 IPR017441 GO:0005524
Chy01g00887 509 MobiDBLite consensus disorder prediction 463 509 - -
Chy01g00887 509 Coils Coil 214 234 - -
Chy01g00887 509 SUPERFAMILY Protein kinase-like (PK-like) 178 471 IPR011009 -
Chy01g00887 509 SMART serkin_6 194 465 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy01g00887 509 MobiDBLite consensus disorder prediction 463 482 - -
Chy01g00887 509 CDD STKc_IRAK 200 466 - -
Chy01g00887 509 Pfam Protein kinase domain 197 463 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy01g00887 509 Gene3D Transferase(Phosphotransferase) domain 1 270 484 - -
Chy01g00887 509 ProSiteProfiles Protein kinase domain profile. 194 452 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy01g00887 509 Gene3D Phosphorylase Kinase; domain 1 176 269 - -
Chy01g00887 509 PANTHER OS10G0497600 PROTEIN 5 503 - -
Chy01g00887 509 MobiDBLite consensus disorder prediction 483 509 - -
Chy01g00887 509 PANTHER OS01G0323000 PROTEIN 5 503 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g00887 Chy-Chr1:8089751 Chy02g00904 Chy-Chr2:5874875 2.33E-179 dispersed
Chy11g01190 Chy-Chr11:18061611 Chy01g00887 Chy-Chr1:8089751 2.07E-69 dispersed
Chy05g01011 Chy-Chr5:14772801 Chy01g00887 Chy-Chr1:8089751 0 transposed
Chy09g00490 Chy-Chr9:4750571 Chy01g00887 Chy-Chr1:8089751 1.03E-36 transposed
Chy11g01610 Chy-Chr11:22647691 Chy01g00887 Chy-Chr1:8089751 0 transposed
Chy01g00887 Chy-Chr1:8089751 Chy11g01010 Chy-Chr11:14271081 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
70985 PF00069 Pkinase 6.60E-48 CL0016 Chy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy01g00887 - - csv:101212378 999.193