Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy01g00888 ATGTCAAATGATGAAGGGAAAAATGTGTACCAGCAGTATGATCCATTTCAATACAACCAATTGGATATGAACCGTTCAATCTTCCATCAACAAGCTGCAGCGGCGTTGGATCCTGGGCTGATGAGTTTCACTAATTTCTTCGATACCAGCACTTTGGAATATAATAGCCTGACGAAGGCGTTCGATGTGTCGTGCTGTTCATCTCAAGTCATTTCTGCAGTGGACGACGTGTCGAAAAAGAAGGCTTCAACGACAACCCCAAATTCTTCAGTGTCATCTTCGTCTAATGAAGCTGTAGTTGAAGAAGATTCAGTGAAGAGCAACAAATTAGAAGACATAAAAGGGCGGTGCGAGAATAAAGATGAAGAAAAATCTAAGAAACAGAACAGCAATTTATCAAAAAAGAAAGAGAAACGGCCGAGGGAGCCCCGTTTTGCTTTCTTGACTAAGAGTGAGATTGATCATCTTGAAGATGGATATAGATGGAGAAAATATGGTCAGAAAGCAGTTAAAAATAGTCCTTACCCCAGAAGCTACTATAGATGCACCAGCCAAAAATGTGTAGTAAAAAAACGAGTTGAAAGATCATATCAAGATCCATCTGTGGTGATTACTACATATGAAGGCCAACACAACCACCATTGCCCAGCTACACTCCGAGGCCATTCTGCAGGGATCATGTCGTCTCCATTCTACGCACCAGCATCAACATCAGTAACAGCAGCCTCATCGGGGCCTACGCTTCCCCAAGAACTCTTCTCGCATTTGTTACCAACGAATAACTGCCAAACCGACCCAGCTGCCTCGATGATGTACCAAAATCTAAGCCTTCAACAACACCTTCAAATGCCTGATCATTATGGTTTGTTGCAAGATTTATTCACTCAAAAATAG 894 42.17 MSNDEGKNVYQQYDPFQYNQLDMNRSIFHQQAAAALDPGLMSFTNFFDTSTLEYNSLTKAFDVSCCSSQVISAVDDVSKKKASTTTPNSSVSSSSNEAVVEEDSVKSNKLEDIKGRCENKDEEKSKKQNSNLSKKKEKRPREPRFAFLTKSEIDHLEDGYRWRKYGQKAVKNSPYPRSYYRCTSQKCVVKKRVERSYQDPSVVITTYEGQHNHHCPATLRGHSAGIMSSPFYAPASTSVTAASSGPTLPQELFSHLLPTNNCQTDPAASMMYQNLSLQQHLQMPDHYGLLQDLFTQK* 298
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8099252 8101484 - Chy1G008880.1 Chy01g00888 218069
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy01g00888 297 MobiDBLite consensus disorder prediction 77 101 - -
Chy01g00888 297 ProSiteProfiles WRKY domain profile. 151 216 IPR003657 GO:0003700|GO:0006355|GO:0043565
Chy01g00888 297 MobiDBLite consensus disorder prediction 102 146 - -
Chy01g00888 297 Gene3D WRKY domain 141 217 IPR036576 GO:0003700|GO:0006355|GO:0043565
Chy01g00888 297 SUPERFAMILY WRKY DNA-binding domain 149 216 IPR036576 GO:0003700|GO:0006355|GO:0043565
Chy01g00888 297 PANTHER WRKY TRANSCRIPTION FACTOR 71-RELATED 16 295 - -
Chy01g00888 297 MobiDBLite consensus disorder prediction 77 146 - -
Chy01g00888 297 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 16 295 IPR044810 GO:0003700
Chy01g00888 297 Pfam WRKY DNA -binding domain 157 213 IPR003657 GO:0003700|GO:0006355|GO:0043565
Chy01g00888 297 SMART WRKY_cls 156 215 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g00888 Chy-Chr1:8099252 Chy02g00170 Chy-Chr2:1195290 4.17E-58 dispersed
Chy03g00701 Chy-Chr3:9543590 Chy01g00888 Chy-Chr1:8099252 7.69E-46 transposed
Chy01g00888 Chy-Chr1:8099252 Chy11g01009 Chy-Chr11:14264192 2.99E-51 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17309 PF03106 WRKY 5.60E-25 CL0274 Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy01g00888 - - csv:101211248 552.362