Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy01g00968 ATGGACTGGACCAGAGGCCCCCCCGTCGGCCGCGGCTCCTCCGCCACCGTCTATATGGGTACACTCAACTCATCCGGCCAACAATTCGCCGTCAAATCCACCGACCTTGCATCATCGGCTCTCTTGCAGAAGGAACACGCTCTTCTCTCCAATTTGAGCTCCCCATACCTAATTAAGTCCCTAGGTTTCGACGTTGAAACCCAACCCTTCAATCCCCCGGTGTTCAATCTGTTCATGGAGTATTTGCCGGAGGGGACTCTGTGGGACGCGATTCAGAGCAACGGCGGTCGAATTGAGGAATCGATGATCCGAGTGTTTTCGCGGCAGATTCTCAAAGGATTGGACTACCTTCATGCTAATGGATTCGCACATTGCGATATCAAGAGCCGGAATCTGTTACTGAGTGATGAGGGTTTGAAAATTGCCGATCTAGGTTGTGCGAAATTTGTGGATGGAATTTCCGGTAATGGAGTTGGGGCTTTTTCTGGTTCGCCGGCGTTCATGGCGCCGGAAGTTGCAAGAGGTGAAGAACAGGGATTTCCGGCCGATGTTTGGGCTTTTGGATGTACAGTCATTGAAATGGCTACTGGGGATCATCCATGGCCGGAAATAGAGGATCCGGTTTCGGCGTTGTATCGGATTGGATTTTCCGGCGAGTTACCAGAGATTCCGCGGTGGTTGTCGGAAATTGCGAGGGATTTTGTCGCCAAGTGTTTGATAAAAGACTCGAAAGAAAGATGGAGTGTGAAACGGCTTCTTGAGCATCCGTTTCTTCAAGGATTTGATTCTGAATCGGAGATTGAAGGGTCGAGGATGAAAATGGTGAATTCTTCTTCTCCCAGCTGTGTTTTGGATCAGAGGTTTTGGGATTCAATGGAAGATTTGGAAACTCCATTGAAGGTGACTCAACAAGCTTCTTTGGTGGATTGTCCAGCTGAGAGGATTAGAAGGTTGGCTGATAATTTCTCTTGCGATTTGGAATTGGAATGGGATGATGGAGATTGGTTTTTGATCAGAACCAATGGGATCGGCGGTGGAAGCCATGGAAATGGATCTGTGAGCATAGATTTTTGTGCTACAGTTGAAGAAGAAGAAAATTTGAACTCGAAAATTGAAGAAAATTCTGTATTGTTCTGTTTAGTTGATAATTTTAGTATTGTGAACAGTTGGAAAGGAGGATTAGAAATGGAATTAAAGAGTGATTTTATGTTGGAAACTGTTGAAAACTATTTTTCTTTTACATTAATCCAAATTCATCTCCTATTTCCTCATGATCTTCATCTTCTTCTTTTGTTTCTTTTTCCAAATTTGACATGCCTCATTGCCATGTTCAACAATTATAGTTTGGTCAAACAAAAAGCGAAGGTTATTCCAAAATTTTCAATATCGTGA 1392 44.25 MDWTRGPPVGRGSSATVYMGTLNSSGQQFAVKSTDLASSALLQKEHALLSNLSSPYLIKSLGFDVETQPFNPPVFNLFMEYLPEGTLWDAIQSNGGRIEESMIRVFSRQILKGLDYLHANGFAHCDIKSRNLLLSDEGLKIADLGCAKFVDGISGNGVGAFSGSPAFMAPEVARGEEQGFPADVWAFGCTVIEMATGDHPWPEIEDPVSALYRIGFSGELPEIPRWLSEIARDFVAKCLIKDSKERWSVKRLLEHPFLQGFDSESEIEGSRMKMVNSSSPSCVLDQRFWDSMEDLETPLKVTQQASLVDCPAERIRRLADNFSCDLELEWDDGDWFLIRTNGIGGGSHGNGSVSIDFCATVEEEENLNSKIEENSVLFCLVDNFSIVNSWKGGLEMELKSDFMLETVENYFSFTLIQIHLLFPHDLHLLLLFLFPNLTCLIAMFNNYSLVKQKAKVIPKFSIS* 464
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 9775777 9777168 + Chy1G009680.1 Chy01g00968 218149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy01g00968 463 CDD STKc_MAPKKK 2 258 - -
Chy01g00968 463 Pfam Protein kinase domain 7 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy01g00968 463 ProSitePatterns Protein kinases ATP-binding region signature. 9 32 IPR017441 GO:0005524
Chy01g00968 463 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 1 360 - -
Chy01g00968 463 SUPERFAMILY Protein kinase-like (PK-like) 3 300 IPR011009 -
Chy01g00968 463 ProSiteProfiles Protein kinase domain profile. 3 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy01g00968 463 SMART serkin_6 3 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy01g00968 463 Gene3D Transferase(Phosphotransferase) domain 1 2 310 - -
Chy01g00968 463 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 15 1 360 - -
Chy01g00968 463 ProSitePatterns Serine/Threonine protein kinases active-site signature. 122 134 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g00968 Chy-Chr1:9775777 Chy11g00625 Chy-Chr11:7372794 4.90E-98 dispersed
Chy01g00968 Chy-Chr1:9775777 Chy01g00438 Chy-Chr1:3150118 1.20E-105 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
70987 PF00069 Pkinase 4.10E-50 CL0016 Chy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy01g00968 K20716 - csv:101205426 827.78