Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy01g01016 ATGTCATCTTGTGGCTTCCGATTGCTCACTACAGAATCCTCAATTGTTTCTCATTCTCCCAAAACTTTCTTCATCCCCTTTAATTCCCACCATTTCCCTTTTCTTCGATCCATTTCTTTCCAAAGATTTCCCTCCAAATCCCCGTCTTCACTCTCCGTGTCTGCTTCCGCCGCCTCCTCCAAGCCTCTGCAACCCATTGAACAACTCCCTCCCAAGCTTCAAGATATCGTCAAGCTCTTTCAATCGGTTCAGGATTCCAGGGCCAAGTACGAGCAGCTCATGTTCTATGGCAAAAACCTCAAACCCCTTCACCCCCAATTCAAAAACAACTCCAACAAGGTTGAGGGTTGCGTTTCTCAGGTCTGGGTCAGAGCTTATTTGGATTCCGATAAGAACGTTGTTTACGAGGCCGATTCCGACTCTGTTCTAACCAAGGGTCTTGCCGCTCTGCTCGTTCAAGGCCTTTCCAATCGTCCTGTGGATGAGATTCTTAGGGTTTCTCCTGATTTCGTTGTTCTTCTTGGCCTTCAACAGAGCCTTACGCCTTCTAGGAATAATGGGTTTTTGAATATGTTGAAGTTGATGCAGAAGAAGGCGCTTGCGTTGCTTGTGGAATCTGAAAAAGGTAATGGCAGTGCGGTTTCATCGTCACAAACAGATGATTCTGTTGAGAAAGTTAAACCAGAATCTAATACTGAGAAATCTGTTGTGGATTCGAAGTTGGGGGATAAAGGAAATCAAAGTTCTAATGTATTAGGAAGTAGAGGGAAGAGAATAAAGGAGATATTGGAGAGAGAGCTAAATCCGGTGGAATTGTATGTTGAAGACATCTCTTATCAACATGCAGGGCATGCTGGGGTAAGGGGTAATGATGGAGAAACTCACTTTAATTTGAAGGTTGTGTCAAAGGAGTTTGAAGGAAAAAGTTTAGTGAAGAGGCACAGGCTCGTTTATAATCTGTTGCAAGATGAGTTGCAGAGTGGACTCCACGCCTTATCCATCTCAGCAAAGACACCTGATGAAATCTGA 1029 44.22 MSSCGFRLLTTESSIVSHSPKTFFIPFNSHHFPFLRSISFQRFPSKSPSSLSVSASAASSKPLQPIEQLPPKLQDIVKLFQSVQDSRAKYEQLMFYGKNLKPLHPQFKNNSNKVEGCVSQVWVRAYLDSDKNVVYEADSDSVLTKGLAALLVQGLSNRPVDEILRVSPDFVVLLGLQQSLTPSRNNGFLNMLKLMQKKALALLVESEKGNGSAVSSSQTDDSVEKVKPESNTEKSVVDSKLGDKGNQSSNVLGSRGKRIKEILERELNPVELYVEDISYQHAGHAGVRGNDGETHFNLKVVSKEFEGKSLVKRHRLVYNLLQDELQSGLHALSISAKTPDEI* 343
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 10724888 10725916 + Chy1G010160.1 Chy01g01016 218197

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy01g01016 342 MobiDBLite consensus disorder prediction 222 240 - -
Chy01g01016 342 Gene3D - 68 210 - -
Chy01g01016 342 Pfam BolA-like protein 263 341 IPR002634 -
Chy01g01016 342 Pfam Fe-S metabolism associated domain 78 197 IPR003808 -
Chy01g01016 342 MobiDBLite consensus disorder prediction 210 252 - -
Chy01g01016 342 PANTHER - 13 342 - -
Chy01g01016 342 SUPERFAMILY BolA-like 250 341 IPR036065 -
Chy01g01016 342 PANTHER SUFE-LIKE PROTEIN 1, CHLOROPLASTIC/MITOCHONDRIAL 13 342 - -
Chy01g01016 342 SUPERFAMILY SufE/NifU 68 202 - -
Chy01g01016 342 Gene3D - 253 342 IPR036065 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy01g01016 K22066 BOLA1; BolA-like protein 1 - csv:101219240 625.165
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g01016 Chy-Chr1:10724888 Chy12g01369 Chy-Chr12:17895773 8.75E-36 dispersed
Chy01g01016 Chy-Chr1:10724888 Chy12g01231 Chy-Chr12:17021797 9.27E-17 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g778 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy01g01016 Cme01g01093
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010158 1 3 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy01g01016 Chy_Chr01 FPKM 31.056765 32.441597 33.93248 33.29921 23.186518 19.535034 27.120722 48.882828 55.206039 61.807209