Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy01g01025 ATGAGAATCACTGTGATGACAGCCGACGAACAGATTCTTTCCTTGGATGTTGATCCCAATGAATCTGTTGAGAACGTGAAGGCTCTGCTCGAGGTTGAGACTCAAGTACCGCTTCAGCGGCAGCAGCTGCTGTACAATGGGAAGGAGATGAAAAATTTTGAAAAGTTGAGTGGCTTGGGTGTTAAAGACGAAGATTTGATTATGATGGTATCAGCTGGCGCTTCTAGTGCTCCTACCAATAATTTGAGCTTTAATCCAGATGGTTCTGCAGTGAACCCTGAAGCCTTCCAGCAACACATTAGACGTGACTCAAATACAATGGCTCAACTTTTTCAGAGTGACCCTGAATTGGCACAAGCTATTGTTGGAAACGACCTGAATAATCTGCAACAGATTTTAAGAGAGCGTCATCGTCAAAGATCTGTATTACAGCGTCAACAAGAAGAGGAGATGGCCCTTCTGTATGCAGATCCTTTTGATGTTGAGGCCCAAAAGAAGATTGAAGCTGCTATTCGCCAGAAAGGAATCGATGAAAATTGGGCTGCAGCTCTTGAACACAATCCCGAAGCTTTTGCAAGGGTGGTCATGTTATACGTTGACATGGAAGTTAATGGTGTCCCATTAAAGGCATTTGTTGATAGCGGAGCTCAATCAACAATTATATCAAAAAGCTGTGCTGAGAAATGTGGATTGTTGAGGCTTCTAGATCAACGCTACAAGGGCATTGCTCGTGGAGTAGGCCAATCAGAGATCTTAGGTCGAATCCATGTAGCTCCAATCAAGATTGGTAGTATATTCTACCCGTGCTCGTTTCTGGTACTGGATTCCCCAAATATGGACTTCCTATTTGGTCTGGATATGCTACGGAAACACCAGTGTATTATTGATTTGAAGGAGAATGTTTTGAGAGTTGGTGGAGGAGAGGTCTCTGTACCATTTTTGCAAGAGAAAGATATTCCCCCTTCTCTTTTTGATGAGGAAAGGCTCTCAAAGGAAGCCTCTAGCTCTGGAGCGCCAGTGGCTTCATCCCCAGCAGAGAACGGCAGAAATGCAAGAGCTGCTCAAGCTACAGGAAATATTGGGGGAGCAGCCCAGGATCCGGAATTCGAAGCCAAAGTAGCAAAGCTCGTTGAATTGGGATTCCAAAGAGAAGCTGTAATACAAGCTCTCAAACTATTTGATGGAAATGAAGAACAGGCAGCTGGGTTTCTTTTTGGATGA 1221 44.23 MRITVMTADEQILSLDVDPNESVENVKALLEVETQVPLQRQQLLYNGKEMKNFEKLSGLGVKDEDLIMMVSAGASSAPTNNLSFNPDGSAVNPEAFQQHIRRDSNTMAQLFQSDPELAQAIVGNDLNNLQQILRERHRQRSVLQRQQEEEMALLYADPFDVEAQKKIEAAIRQKGIDENWAAALEHNPEAFARVVMLYVDMEVNGVPLKAFVDSGAQSTIISKSCAEKCGLLRLLDQRYKGIARGVGQSEILGRIHVAPIKIGSIFYPCSFLVLDSPNMDFLFGLDMLRKHQCIIDLKENVLRVGGGEVSVPFLQEKDIPPSLFDEERLSKEASSSGAPVASSPAENGRNARAAQATGNIGGAAQDPEFEAKVAKLVELGFQREAVIQALKLFDGNEEQAAGFLFG* 407
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 10844064 10856019 - Chy1G010250.1 Chy01g01025 218206

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy01g01025 406 Gene3D Acid Proteases 175 321 IPR021109 -
Chy01g01025 406 Pfam Ubiquitin family 3 70 IPR000626 GO:0005515
Chy01g01025 406 SUPERFAMILY Ubiquitin-like 1 81 IPR029071 -
Chy01g01025 406 MobiDBLite consensus disorder prediction 335 354 - -
Chy01g01025 406 CDD UBA_scDdi1_like 370 405 - -
Chy01g01025 406 SMART ubq_7 1 72 IPR000626 GO:0005515
Chy01g01025 406 ProSiteProfiles Ubiquitin domain profile. 1 70 IPR000626 GO:0005515
Chy01g01025 406 MobiDBLite consensus disorder prediction 333 356 - -
Chy01g01025 406 Gene3D - 1 85 - -
Chy01g01025 406 SUPERFAMILY Acid proteases 182 297 IPR021109 -
Chy01g01025 406 Gene3D - 334 406 - -
Chy01g01025 406 SMART uba_6 369 406 IPR015940 -
Chy01g01025 406 CDD RP_DDI 181 304 IPR019103 GO:0004190|GO:0006508
Chy01g01025 406 Pfam Aspartyl protease 174 296 IPR019103 GO:0004190|GO:0006508
Chy01g01025 406 CDD Ubl_Ddi1_like 1 70 IPR033882 -
Chy01g01025 406 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 364 406 IPR015940 -
Chy01g01025 406 Pfam UBA/TS-N domain 370 403 IPR015940 -
Chy01g01025 406 PANTHER ASPARTYL PROTEASE DDI-RELATED 1 405 - -
Chy01g01025 406 PANTHER AT13091P 1 405 - -
Chy01g01025 406 SUPERFAMILY UBA-like 365 406 IPR009060 GO:0005515
Chy01g01025 406 Coils Coil 129 149 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy01g01025 K11885 DDI1; DNA damage-inducible protein 1 - csv:101218534 778.859
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g751 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone15ag1285 . Csa07g01048 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy01g01025 Cme01g01107
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005655 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 1 1 2 2 1 1 1 1 1 1 1 1 4 1 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy01g01025 Chy_Chr01 FPKM 14.7398 14.230034 15.073793 14.957225 11.489996 11.975766 12.491469 14.08827 14.953198 14.834455