Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy01g01034 ATGTTAGGCTTTGAAGGTCCTGGAACTAGTGATGAAATTAGAGAGAGCTTTGAAAATTCTGAAGATGAGAGACGGCTGTCCAAAATTGGGAACCTCAAGAAAAAGGCAATAAATGCTTCCAATAAATTTACTCACTCTCTTAAGAAAAGAGGAAAGAGGAAAATTGACTACAGGATTCCTTCAGTACCCATAGAGGATGTACGAGATGCAAAAGAGGAGAGTGCTGTCCATGAATTGCGTCAAAAACTTCTTGAGAGGAATTTATTACCTGTTAGGCTTGATGATTATCATACTTTACTGAGATTTTTGAAAGCTAGAGAGTTTAACATGGAAAAGACAATCCGGATGTGGGAAGAAATGCTTAATTGGAGAAAGGAATATGGAGCTGATACTATTCTAGAGGATTTCGAATTTGAAGAGCTTGAAGAGGTGTTGCAGTATTATCCTCAGGGATATCATGGAGTTGATAAAGAAGGCAGACCAGTTTACATAGAGAGACTAGGAAAAGCCCATCCAAGTAGGCTCATGCATATCACCACGATAGATAGATACTTGAAGTACCATGTGCAAGAATTTGAAAGGGCACTACATGAAAAATTCCCTGCTTGTACAATTGCATCTAAGAGAAGAATCTGTTCAACGACAACAATATTGGATGTGCAGGGCTTGGGCATGAAAAATTTCTCCCGCACTTCTGCAAATCTCTTAGCTGCCATGACAAAGATAGACAGTTCTTACTATCCTGAGACATTACATAGAATGTATATCGTCAATGCTGGATCTGGTTTTAAGAAGATGCTCTGGCCAGCTGCTCAGAAATTTCTTGATGTGAAGACTGTTTCCAAGATTCAGGTTCTTGAATCCAAGTCAATTGGAAAGCTACTTGAAGTGATTGATTCAGATCAGTTGCCAGATTTCTTAGGTGGCTCGTGTACATGTAGTGGCGTTGAGGGAGGATGCCTTCGATCTAATAAAGGTCCTTGGAACGATCTTGATATTATGAAGGTTGTGCATAATGCAGGAGCCACCTTTGTAAGGCAAGGCCCAAGAGTGGGCAAGAATGAAGCAAAATGTGACTCCCGTGCTCAAATGCCTTCAATGAAGGAAAGAAATAGTGATACATCATTAGCGGATTCAGGATCAGATCTTGATGACCCGTATTCCCCACTGGGGCGTGCTGGCTCTTTGGTTACTTGTTTGGCTCCCGTTCACGAAGAGCATAGGACAGCAGATCCAAATTCTTACTACAGTTGTGATGATTTCCTACCGGCTAGTTCAGTAGCTGACAGTGCCGAAGGCGTTGGAGGTTCTCAGGGTCCATCTCTTGAAATAATGGAGAATGGAAATTTCTTGAACGACGAAGCATCGAACACAGAAGATGTGATAGAAAATGAGCATGAAATTCTGAAACAAAAACTTGAGAAAAGAAACGTTCAGTCTATGGGGAGAGTTCTTATATCATTCTGGGTTAAATTGGTAGCAGTTGTTCGTAGTTTACAGTTTCAGTTTTGGAAAAGACAGAACAACATATATCCTTCTAACACAGTACACATTACAAATAACAATGCTGCTGCAATCCAAGTGGTAAACGAAGAAGATTTCGTCGGTCCATGTTTACAGCGTCTTGAAAGGCTAGAAAAAATCTTTGTAGAACTGAGCAACAAGCCTGCTAAAATTCCTTTGGAAAAAGAGCATTTACTTACTGAATCTTTGGACAGAATCAAGTCGGTTGAATTTGACCTGGAGAAAACGAAAAGAGCACTCCACGCTACTGTCTTAAAGCAACTTGAGGCTGGTGAGCTGCTAGAAAAATTACGAGACTCCCAATGTCAA 1833 40.59 MLGFEGPGTSDEIRESFENSEDERRLSKIGNLKKKAINASNKFTHSLKKRGKRKIDYRIPSVPIEDVRDAKEESAVHELRQKLLERNLLPVRLDDYHTLLRFLKAREFNMEKTIRMWEEMLNWRKEYGADTILEDFEFEELEEVLQYYPQGYHGVDKEGRPVYIERLGKAHPSRLMHITTIDRYLKYHVQEFERALHEKFPACTIASKRRICSTTTILDVQGLGMKNFSRTSANLLAAMTKIDSSYYPETLHRMYIVNAGSGFKKMLWPAAQKFLDVKTVSKIQVLESKSIGKLLEVIDSDQLPDFLGGSCTCSGVEGGCLRSNKGPWNDLDIMKVVHNAGATFVRQGPRVGKNEAKCDSRAQMPSMKERNSDTSLADSGSDLDDPYSPLGRAGSLVTCLAPVHEEHRTADPNSYYSCDDFLPASSVADSAEGVGGSQGPSLEIMENGNFLNDEASNTEDVIENEHEILKQKLEKRNVQSMGRVLISFWVKLVAVVRSLQFQFWKRQNNIYPSNTVHITNNNAAAIQVVNEEDFVGPCLQRLERLEKIFVELSNKPAKIPLEKEHLLTESLDRIKSVEFDLEKTKRALHATVLKQLEAGELLEKLRDSQCQ 611
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11172128 11175748 + Chy1G010340.1 Chy01g01034 218215

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy01g01034 611 MobiDBLite consensus disorder prediction 1 25 - -
Chy01g01034 611 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATED 14 608 - -
Chy01g01034 611 SUPERFAMILY CRAL/TRIO N-terminal domain 69 136 IPR036273 -
Chy01g01034 611 MobiDBLite consensus disorder prediction 367 381 - -
Chy01g01034 611 MobiDBLite consensus disorder prediction 351 387 - -
Chy01g01034 611 Gene3D - 62 127 - -
Chy01g01034 611 SMART sec14_4 140 312 IPR001251 -
Chy01g01034 611 CDD SEC14 144 309 IPR001251 -
Chy01g01034 611 MobiDBLite consensus disorder prediction 352 366 - -
Chy01g01034 611 MobiDBLite consensus disorder prediction 11 25 - -
Chy01g01034 611 Pfam CRAL/TRIO domain 146 309 IPR001251 -
Chy01g01034 611 Gene3D - 128 349 IPR036865 -
Chy01g01034 611 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 140 315 IPR001251 -
Chy01g01034 611 Coils Coil 452 472 - -
Chy01g01034 611 Pfam CRAL/TRIO, N-terminal domain 95 119 IPR011074 -
Chy01g01034 611 PANTHER PHOSPHATIDYLINOSITOL/PHOSPHATIDYLCHOLINE TRANSFER PROTEIN SFH13 14 608 - -
Chy01g01034 611 SUPERFAMILY CRAL/TRIO domain 139 337 IPR036865 -
Chy01g01034 611 SMART CRAL_TRIO_N_2 95 120 IPR011074 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy01g01034 - - - csv:101217583 1196.42
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g01034 Chy-Chr1:11172128 Chy11g00362 Chy-Chr11:3336415 6.65E-165 dispersed
Chy01g01034 Chy-Chr1:11172128 Chy02g00472 Chy-Chr2:2914446 4.94E-19 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g728 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone14ag1268 Cone15ag1294 . Csa07g01043 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy01g01034 Cme01g01117
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003795 2 3 2 3 2 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 5 1 1 45
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy01g01034 Chy_Chr01 FPKM 2.865718 2.461182 3.261945 2.890808 3.487625 3.14615 4.280015 5.032918 4.813746 5.535815