Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Chy01g01059 | ATGGCGTATACTTTAGAATCATGGACGAAGGAATACAATGAAGCTTTGAAACTCTCTGAAGATATCAATGGCATGATTTCTGAGAGAAGTTCACTTGCTGCGTCTGGACCGGAAGCTCAGCGTCATGCCTCAGCTATACGCAGGAAGATCACAATATTGGGTACCAGACTTGATACCTTGCAGAGTCAATTACCCAAACTTCAAGGAAAGCAACCAATACCAGAGAAAGAGATGAATCGCCGCAGGGACATGATTGGAAATTTGAGATCAAAGGCTAAGCAGATGGCTTCAACTTTGAACATGTCTAACTTTGCCAACCGGGATAGCTTACTTGGCCCAGAAATAAAGCCAGCTGATGTCGTGAACAGAACAGAAGGCTTAGATAACCGAGGCCTAGTTGGTTTTCAACGACAAATTATGAGAGAACAAGATGAAGGCCTTGAGAAACTGGAAGGGACTATAATTAGCACAAAACATATTGCATTAGCTGTCAATGAAGAACTTAACCTTCACACGAGACTGATTGATGATTTGGATGAACATGTCGATGTTACAGATTCCCGATTACGGCGAGTGCAGAAGAGGCTGGCAATATTGAACAAGCAGACCAAGGGTGGTTGCACTTGCATGTCGATGATTTTATCAGTTGTTGGGATCGTCGTTCTCATTGCTGTCATATGGCTACTGGTCAAGTATTTGTAA | 702 | 42.88 | MAYTLESWTKEYNEALKLSEDINGMISERSSLAASGPEAQRHASAIRRKITILGTRLDTLQSQLPKLQGKQPIPEKEMNRRRDMIGNLRSKAKQMASTLNMSNFANRDSLLGPEIKPADVVNRTEGLDNRGLVGFQRQIMREQDEGLEKLEGTIISTKHIALAVNEELNLHTRLIDDLDEHVDVTDSRLRRVQKRLAILNKQTKGGCTCMSMILSVVGIVVLIAVIWLLVKYL* | 234 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 11777833 | 11779421 | + | Chy1G010590.1 | Chy01g01059 | 218240 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Chy01g01059 | 233 | SMART | tSNARE_6 | 132 | 199 | IPR000727 | - | |
| Chy01g01059 | 233 | Pfam | SNARE domain | 174 | 224 | IPR000727 | - | |
| Chy01g01059 | 233 | CDD | SNARE_Qc | 140 | 197 | - | - | |
| Chy01g01059 | 233 | Gene3D | - | 139 | 201 | - | - | |
| Chy01g01059 | 233 | SUPERFAMILY | SNARE fusion complex | 128 | 199 | - | - | |
| Chy01g01059 | 233 | ProSiteProfiles | t-SNARE coiled-coil homology domain profile. | 137 | 199 | IPR000727 | - | |
| Chy01g01059 | 233 | PANTHER | TARGET SNARE COILED-COIL DOMAIN-CONTAINING PROTEIN-RELATED | 6 | 228 | - | - | |
| Chy01g01059 | 233 | PANTHER | SYNTAXIN | 6 | 228 | IPR045242 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Chy01g01059 | Chy-Chr1:11777833 | Chy06g01863 | Chy-Chr6:22511495 | 9.92E-117 | dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Chy01g01059 | K08503 | - | csv:101208669 | 428.328 |