Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy01g01070 ATGGATTTTGTGAGTAACCGCAAGGGGCTCGGGAGTACATCGTATGGATATGTCACTATGATCAATCCTATTCCTGTTTTAAGAACGGGTGACTGGAACTACAATAGAGTAATGGCGTCTTCAGATGATGAGGCTGAGACCTTACCAGTACCACCTGTCTCAAATTATCACTTTGTGGATCACAAGGAAGAACCTATTTCATTCTCTATTTTGCCGATTAAATGGGATGAAGGGGAGAGATTGGAGGGCAGTCAAGAACCTGTTTTCCTCCATGGTACAGTTGATAATGGACTTCAAAAGGTTTATAAACAGGTTACCGCATGGAGATTTAATATTTCTGGTTCAAAGCCAGAGATATCGGTGCTTTCCAAAGAGACTGTGTGGATTACACTTCAGAAGCCTAGAAAGAGCTTTGAGGATACCATTAGAACCATCTTGATCACAGTGCACTGCCTTCATGCTTTGAAGAGGAATCCAGATACATCTAGCAAATCTTTGTGGGATCTATTATCTAAAACCTTTAGCTTGTATGAAGTGAGGCCTTCCCAGAATGATTTGGTGGATCACATGTCATTAATCGGAGAAGCAGTTAAAAGGGATGATATATTGGCCAAGTCCCAGTTCTTACTTGCATTCCTTGAAGAGAAGCCTGTTAAGAGAATGTCATGTCATGAGTTGTACTTTCAGGATGCTCAACGTAATGTGCAGCCAAGTTTTATAGTTGATGATTCAGATGATGAAGACATAGTTGATGATGCTGTTGAAGAGGAAAGTGATGATGATGTCTTTGATTCTGTCTGTGCATTTTGTGATAATGGTGGCAACATTATATGCTGTGATGGGAGGTGCATGAGGTCCTTTCATGCAACTGAAGAGGATGGTGATTGTTTCTCGCTCGGTCTCTCTAAAGAAGAAGTAGATGCAATTGAAACCTTTATTTGCAAGAATTGCGAGTATAAACAGCACCAGTGCTATGCTTGCGGGAATTTAGGTTCATCTGATCAGTCTTCTGGTGCTGAGGTCTTCCAATGCGTAAATGCAACTTGTGGTTATTTTTATCATCCTAAATGTATTTCAAGATTGCTTCATCCGGAGAATAAAGTTGCCGCTGGAGACCTTGAGAAGAAGATTGCATCTGGAGAATCTTTCTCATGCCCTGTGCATAAGTGCTCTGTTTGTGCGCTCGGCGAAAATAAGAAAATATGGGAACTACAGTTTGCTGTTTGTCGACGATGTCCAAAATCATACCACAGGAAATGCTTACCAGGGAAAATCACTTTTGAAGGTTCTGAGGATGGTGAAACCCCGACCAGGGCATGGGAAAAGCTATTGCCTAATCGCATTTTGATATATTGCTTGGACCACGAGATTGATGAAGAAATTGAGACTCCTGCTAGAGACCATATAAAATTTCCTGGTCTTGAAGAGAGTAGGCTTCCCATTCACAAAAGGAAACTTCCTATCAGTGATACAAGACAAGGGAAGATGATAGTTTTTCGTGGGAGTAGGGAGAATGTTGTATCAAAGAAGGGATCTATGCCAGATGACCTTCAGGGAAAATCTGCTGCAAAAGTATCCAAATCATTTGAGAGGTCCTCATCTGATGGGAAGCTTCTTGGTAAAGTGACTGCGAAATCATTGTGGAGTTCTGGGTCTAAAAATGTGAAATTGGGTAACATTTCAAGAAACTCTTTGAATCAAAAAGGAGAATCTGTCCTCATGGACATTGATAAGACTATCAAAGTGAAAAAATCCTCCTTAGTTGGCAAGTCTGCCATACCAACCAAGAGATTTGATCCAAGTAAGATTTACAAGGAGGATAGAAGTGGGATGCTCCTATTAGATGCCAATTCGGAGAGTAGGTTAATGGACATGATGAAAAATGTTGCATCGTCAGTTACTTTGGAAGATGTAATTAAGAAGCACAAAGTCCCATCTACTCATGCATATTCTTTAAAACATGTAGTGGACAAGACAATTAAGATGGGGAAGTTGGAAGGCTCAGTTGTGGCTGTTCGAGCTGCTCTGCGCAAGCTTGAGGAAGGATGTTGCATTGAGGATGCAGAAGCTGTTTGTGAGCCTGAAGTTCTTAACCACATATTTAAGTGGAAGAACAAACTCAGAGTATATCTTGCACCATTTCTGTATGGCATGCGCTACTCCTCCTTTGGTCGTCATTTTACAAAAGTTGAGAAACTTGTGGAGATTGTTGATAGGCTTCATTGGTACATAGAGAAAGGCAATACAATCGTGGATTTCTGCTGCGGTGCAAATGACTTTAGTGTTCTAATGAAGAAAAAACTTGATGAGACGGGTAAACGATGCTCGTTTAGAAACTTTGACTTTATTCCACCGAAGAATGATTTCAATTTTGAAAAAAGGGATTGGATGACTGTGCAACCGAAGGAATTGCCTAAAGGATCTCAATTGATCATGGGGCTAAATCCTCCATTTGGAGTTAAGGCTGCTTTGGCAAACAAATTCGTTGACAAAGCTCTGGAGTTCAATCCAAAGCTTCTTATTCTTATTGTTCCTCCTGAAACAGAGAGGTTGGAAAAAAAAAAGACTCCTTATGACCTGGTTTGGGAGGATACTGAGTTTTTGTCAGGAAAGTCATTTTATCTTCCTGGATCTGTCGATGCTAAAGACAAGCAGATGGATCAGTGGAATGTCAGGCCACCAGTGCTCTATTTATGGAGCCGTCGTGACTGGACTGATAAACACACAGCCATAGCCCAAGAGCATGGGCATCTCTGGCCAAGGAAACAAGCGCATTCAGAAAAAGAGAAGGCTTCTGATACTTTAAGAGTGAGGCAACTGGAGGAGTCTGAAAAGGGAAAGAGTTCTGATTTGTCAAGGCACAGGCAACAAGAGGACTCAGGAATGGGAAAAGGTTCCGATAAAGGAAAGAGTTCTGATTTGTCAAGACACAGGCAACAAGAGGGCTCAGGAATGGTAAAAGTTTCTGATAAGGAAAAGAGTTCTGATTTGTCGACGCATAGGCAACAAGAGGACTCAGGAATGGGAAAAGGTTCTGATACATCAAGGCCTAAGCAATTGGAGTCAGAAAAAGGCCTAAGGTCTAAAACTTCAGCTAATCATATTCATGAAAAAGAATCTACTACACTAGCACCAGATGAACCAGAAGATTCAAAGAGCGAATCAGTTGTCTCTGGAGTTCCTAAAAATGGATCCACGAAAACATGGAAGAGAGATAGTGACAGAGAGAGTCATGACAATCGGGATATCCATCCTAATCTGTCTCCTGAGGCTCCAAGGAGGAAGAGGCAGCGTTTTGAAGAAATACCTCGAAGAGGTGATGGTGAGACATCAGAAGAGAGCAGACGTGATTGTAAAAGGCCTTTAAGTGAGATTAAACAGAGACCTCCTGCTTCTCCAAATGCGAGTGATCATACATCCAATAAGTCAGTTGAGATGCCTCCATATGCTGATGTGGATGGGATTGGACATCAACAGTCGGGGTCGACTATGACTGAGCCAAACACCAACTTCGGAGCTCCTTACGATGCTGCACAGATCAGCTTAACTGATGACATTGCTAGAAAGTACAACCTCGATGCTGAGGATTATTACCCACGTGGGAACACTGGATGGTCAAACAATGCAAGTCCCATGTATGATATTGGTTCTAGACATGTTGAGGAACGTATCGTGGATCAAATGGGAGGACGTGTTGATGGTCTTAATTATAAACCTTACTCTACTGTGGTTGACACGTATATGAGGGACTCCGAAATACGGTCACATATTCATCATTACGGGCACCCAGATACTGACAATTTAAGAAACAATTATCAAGTTGGACCTGATCCTAGGTATAGCAGGATTGGGGCAATCCCAGCTAGCTATGGGCATCTAGGTACATTTTCTGAACCATCCCGTTGGATGAACACTTCAGCAACACAACGATATGCGCCTCGACTCGATGAGTTGAACCACACTAGATTGGGAGGAATGGGTGCTGCACGTCAGATGAACGGCAGCAGCACTTTCGACCCTAGAGTGCACACATCCTCTGGTTTCAGGGGCGTGTCACAGGGGTTTGCACCTGGTCCTCAATACCCGTATTCGAACCAAAATTCAGCTGGTTGGCTTAATGAATAG 4125 42.38 MDFVSNRKGLGSTSYGYVTMINPIPVLRTGDWNYNRVMASSDDEAETLPVPPVSNYHFVDHKEEPISFSILPIKWDEGERLEGSQEPVFLHGTVDNGLQKVYKQVTAWRFNISGSKPEISVLSKETVWITLQKPRKSFEDTIRTILITVHCLHALKRNPDTSSKSLWDLLSKTFSLYEVRPSQNDLVDHMSLIGEAVKRDDILAKSQFLLAFLEEKPVKRMSCHELYFQDAQRNVQPSFIVDDSDDEDIVDDAVEEESDDDVFDSVCAFCDNGGNIICCDGRCMRSFHATEEDGDCFSLGLSKEEVDAIETFICKNCEYKQHQCYACGNLGSSDQSSGAEVFQCVNATCGYFYHPKCISRLLHPENKVAAGDLEKKIASGESFSCPVHKCSVCALGENKKIWELQFAVCRRCPKSYHRKCLPGKITFEGSEDGETPTRAWEKLLPNRILIYCLDHEIDEEIETPARDHIKFPGLEESRLPIHKRKLPISDTRQGKMIVFRGSRENVVSKKGSMPDDLQGKSAAKVSKSFERSSSDGKLLGKVTAKSLWSSGSKNVKLGNISRNSLNQKGESVLMDIDKTIKVKKSSLVGKSAIPTKRFDPSKIYKEDRSGMLLLDANSESRLMDMMKNVASSVTLEDVIKKHKVPSTHAYSLKHVVDKTIKMGKLEGSVVAVRAALRKLEEGCCIEDAEAVCEPEVLNHIFKWKNKLRVYLAPFLYGMRYSSFGRHFTKVEKLVEIVDRLHWYIEKGNTIVDFCCGANDFSVLMKKKLDETGKRCSFRNFDFIPPKNDFNFEKRDWMTVQPKELPKGSQLIMGLNPPFGVKAALANKFVDKALEFNPKLLILIVPPETERLEKKKTPYDLVWEDTEFLSGKSFYLPGSVDAKDKQMDQWNVRPPVLYLWSRRDWTDKHTAIAQEHGHLWPRKQAHSEKEKASDTLRVRQLEESEKGKSSDLSRHRQQEDSGMGKGSDKGKSSDLSRHRQQEGSGMVKVSDKEKSSDLSTHRQQEDSGMGKGSDTSRPKQLESEKGLRSKTSANHIHEKESTTLAPDEPEDSKSESVVSGVPKNGSTKTWKRDSDRESHDNRDIHPNLSPEAPRRKRQRFEEIPRRGDGETSEESRRDCKRPLSEIKQRPPASPNASDHTSNKSVEMPPYADVDGIGHQQSGSTMTEPNTNFGAPYDAAQISLTDDIARKYNLDAEDYYPRGNTGWSNNASPMYDIGSRHVEERIVDQMGGRVDGLNYKPYSTVVDTYMRDSEIRSHIHHYGHPDTDNLRNNYQVGPDPRYSRIGAIPASYGHLGTFSEPSRWMNTSATQRYAPRLDELNHTRLGGMGAARQMNGSSTFDPRVHTSSGFRGVSQGFAPGPQYPYSNQNSAGWLNE* 1375
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11998816 12052383 - Chy1G010700.1 Chy01g01070 218251

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy01g01070 1374 PANTHER PHD FINGER-CONTAINING PROTEIN DDB_G0268158 38 1316 - -
Chy01g01070 1374 MobiDBLite consensus disorder prediction 983 1000 - -
Chy01g01070 1374 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 321 431 IPR013083 -
Chy01g01070 1374 MobiDBLite consensus disorder prediction 1342 1374 - -
Chy01g01070 1374 MobiDBLite consensus disorder prediction 1016 1053 - -
Chy01g01070 1374 CDD PHD2_NSD 323 388 - -
Chy01g01070 1374 MobiDBLite consensus disorder prediction 1156 1172 - -
Chy01g01070 1374 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 263 320 IPR013083 -
Chy01g01070 1374 MobiDBLite consensus disorder prediction 1129 1143 - -
Chy01g01070 1374 MobiDBLite consensus disorder prediction 915 1172 - -
Chy01g01070 1374 Pfam Cytosine specific DNA methyltransferase replication foci domain 47 172 IPR022702 -
Chy01g01070 1374 MobiDBLite consensus disorder prediction 1067 1124 - -
Chy01g01070 1374 MobiDBLite consensus disorder prediction 1358 1374 - -
Chy01g01070 1374 SUPERFAMILY FYVE/PHD zinc finger 252 321 IPR011011 -
Chy01g01070 1374 SMART PHD_3 390 456 IPR001965 -
Chy01g01070 1374 SMART PHD_3 323 389 IPR001965 -
Chy01g01070 1374 SMART PHD_3 266 318 IPR001965 -
Chy01g01070 1374 MobiDBLite consensus disorder prediction 915 977 - -
Chy01g01070 1374 CDD PHD3_NSD 390 422 - -
Chy01g01070 1374 MobiDBLite consensus disorder prediction 1001 1015 - -
Chy01g01070 1374 PANTHER PHD FINGER-CONTAINING PROTEIN DDB_G0268158 38 1316 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy01g01070 - - - cmos:111445988 1656.34
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g591 Blo03g00537 . Bda07g00383 . . . . . . . Cma01g01105 . Car01g00978 . . . Cpe02g00796 Bhi09g01710 . . . . . . . . . . . . . . . Cone14ag1189 Cone15ag1208 Lsi02g01869 Csa07g00996 . . . . . . Bpe11g00561 . . . . Cmo01g01151 . . . . . . . . . . . . . . Cla09g02036 Cam09g2125 Cec09g2190 . . . . . . Chy01g01070 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003000 1 4 2 0 1 1 1 1 1 1 1 1 1 0 1 1 1 3 1 1 10 1 1 1 1 1 1 3 1 2 46
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy01g01070 Chy_Chr01 FPKM 7.251119 7.072629 0.128096 0.165694 0.010717 0.068421 0.085239 0.001421 0.021284 0.0