Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy01g01078 ATGAGTTTCTCCATGATGGGTTCTTCGGGATGTGAAATTTTGATCCGAAATTCTCACCAGAAGACTGTGAAGTTACAGTTGTTCCATGAAAAAGAGAAGAAGATGATGTTCAAGTTCTCCAAATCTGGCTGTAACCCTGCGAGAGCTCTCCTTAGTAAGCATGAAGCAATTGAGTTTGAAGAGAGGACAAGTCCCATCGAGGTCAGAACGGAGATATCAAAATGCTATGAATTAATAAACAGACTAGGGAAAGGAGTTGTTTATCTTGGATCTTCAAGAATGGGGCCGGATCATGCTCATTACAAGCAAGCTTTCGAATTGAGTAGAGAGATTTCAGAACTTTTGGATTGCACTACTTGGTCAGGTGTCGGTCCGGGTCTTATGGATGCGGTGACAAAAGGTGCTTTACAGGCAGGAAACCCCGTAGGCGGATTCAAAATCGGTAGAGAATCTGGTGAATGGACATCCTCAAAGTTTCATCCATACCTACCTACAGAAACTTATTTTACTTGCAGGTTCTTCTCTGCAAGAAAGCACGGGCTTGTCGATGCTGCAGTTAGAAGCTGTAGTTCTGATAGGACTGCTTTTGTTACTCTTCCCGGCGGCATTGGTACTTTCGATGAGGTGTTTGAGATTCTAGCTTTGATTCAGCTTAGAAGGATAGGGTCAAAACTTCCAGTTCCGTTCCTATTGATGAACTACGACTCTTTCTACTCGAAGTTACTCGAATTTTTTAACGATTGTGAAAACTGGGGTACCTTGGCAAAGGGAGAGGTCGATTCTCTTTGGAAGGTCTGTGACAATAACGCGGAAGCTGTGGCGTACTTGTCTAGTTTTTACAGTTTGTGTGATCATGATAGAGTGAAGAATGAAGTTGGATTGGAAAGCACACATTGA 897 42.81 MSFSMMGSSGCEILIRNSHQKTVKLQLFHEKEKKMMFKFSKSGCNPARALLSKHEAIEFEERTSPIEVRTEISKCYELINRLGKGVVYLGSSRMGPDHAHYKQAFELSREISELLDCTTWSGVGPGLMDAVTKGALQAGNPVGGFKIGRESGEWTSSKFHPYLPTETYFTCRFFSARKHGLVDAAVRSCSSDRTAFVTLPGGIGTFDEVFEILALIQLRRIGSKLPVPFLLMNYDSFYSKLLEFFNDCENWGTLAKGEVDSLWKVCDNNAEAVAYLSSFYSLCDHDRVKNEVGLESTH* 299
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12194321 12196858 + Chy1G010780.1 Chy01g01078 218259

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy01g01078 298 PANTHER EXPRESSED PROTEIN 1 290 - -
Chy01g01078 298 SUPERFAMILY MCP/YpsA-like 60 276 - -
Chy01g01078 298 Pfam Possible lysine decarboxylase 128 275 IPR031100 -
Chy01g01078 298 Gene3D - 64 292 - -
Chy01g01078 298 PANTHER EXPRESSED PROTEIN 1 290 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy01g01078 - - - csv:101207783 592.808
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g01078 Chy-Chr1:12194321 Chy03g01396 Chy-Chr3:16713249 4.16E-06 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g602 Blo03g00529 . Bda07g00392 . . . . . . . . Cma09g00983 . Car09g00894 Sed04g3681 Cpe06g00794 . Bhi09g01725 Tan01g3151 Cmetu01g1653 . . Mch11g1237 . . . . . . . . . Cone9ag0035 . . Lsi02g01861 Csa07g00980 . . . . . . Bpe11g00570 . . Bma14g00309 . . Cmo09g00985 . . . . . . . . . . . . . Cla09g02045 Cam09g2133 Cec09g2198 . . . . . . Chy01g01078 Cme01g00966
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010339 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy01g01078 Chy_Chr01 FPKM 28.113665 30.047228 44.156731 42.17392 26.31134 23.618858 26.739742 84.70652 92.063797 84.275642