Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy01g01084 ATGGCTATTTCTTCACTCTCTGCTACTATTATTCCATCTCCTACTCTTTTTACTTCTTTATCTTCCCATTCTTCTAAACCCAAATTTCCTCCCTTCCCTGCTTCATCTTCTACTGCTTTAAAGCTCAAACCCCTTCAATTTTCCTTCCCATCCACAAGGCTTTATGCTGCTCCTGAAGTTCTAGACTCCTCCGATACCATTGAACCACCTCCCGAAATCTTGGAGGGCTCTGGAGTTTCCACTCTCGAGGGTGAAGATTTTGAGGTTCCTGGGACTTCAGCTCTCAGCATTGGTGAGGATGTAGATAAGATGGCGCCGAAGCAGAAAATTAGAATTAAACTAAGGTCTTACTGGGTTCCACTCATTGAAGATTCTTGCAAGCAAATAATGGATGCTGCAAGGAATACAAATGCAAAAACCATGGGTCCTGTGCCATTACCTACAAAAAAGCGCATTTATTGTGTTCTTAAATCCCCTCATGTTCATAAGGATGCAAGATTCCATTTTGAAATCAGAACCCACCAACGCCTCATTGATATTTTGTACCCTACTGCCCAAACGATCGATTCTTTGATGCAACTCGACCTTCCAGCTGGTGTTGACGTGGAGGTCAAGCTATGA 621 43.0 MAISSLSATIIPSPTLFTSLSSHSSKPKFPPFPASSSTALKLKPLQFSFPSTRLYAAPEVLDSSDTIEPPPEILEGSGVSTLEGEDFEVPGTSALSIGEDVDKMAPKQKIRIKLRSYWVPLIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDILYPTAQTIDSLMQLDLPAGVDVEVKL* 207
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12245479 12247400 + Chy1G010840.1 Chy01g01084 218265

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy01g01084 206 SUPERFAMILY Ribosomal protein S10 109 206 IPR036838 -
Chy01g01084 206 Gene3D Ribosomal protein S10 domain 97 206 IPR036838 -
Chy01g01084 206 PANTHER 30S RIBOSOMAL PROTEIN S10 FAMILY MEMBER 1 206 IPR001848 GO:0003735|GO:0005840|GO:0006412
Chy01g01084 206 SMART Ribosomal_S10_2 111 205 IPR027486 -
Chy01g01084 206 Hamap 30S ribosomal protein S10 [rpsJ]. 107 206 IPR001848 GO:0003735|GO:0005840|GO:0006412
Chy01g01084 206 Pfam Ribosomal protein S10p/S20e 111 205 IPR027486 -
Chy01g01084 206 PRINTS Ribosomal protein S10 family signature 109 122 IPR001848 GO:0003735|GO:0005840|GO:0006412
Chy01g01084 206 PRINTS Ribosomal protein S10 family signature 165 179 IPR001848 GO:0003735|GO:0005840|GO:0006412
Chy01g01084 206 PRINTS Ribosomal protein S10 family signature 144 159 IPR001848 GO:0003735|GO:0005840|GO:0006412
Chy01g01084 206 PANTHER BNAC05G40270D PROTEIN 1 206 - -
Chy01g01084 206 TIGRFAM rpsJ_bact: ribosomal protein uS10 108 205 IPR001848 GO:0003735|GO:0005840|GO:0006412
Chy01g01084 206 ProSitePatterns Ribosomal protein S10 signature. 133 148 IPR018268 GO:0003723|GO:0003735|GO:0005840|GO:0006412
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy01g01084 K02946 RP-S10, MRPS10, rpsJ; small subunit ribosomal protein S10 - csv:101213702 369.777
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g01084 Chy-Chr1:12245479 Chy06g00868 Chy-Chr6:6266354 1.85E-09 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g636 . . Bda07g00398 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag0019 Cone9ag0018 . . . Csa07g01069 . . . . . . Bpe11g00577 . . Bma14g00695 . . . . . . . . . . . . . . . . . . . . . . . . . Chy01g01084 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006978 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 2 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy01g01084 Chy_Chr01 FPKM 9.938903 10.448786 9.645807 11.195534 10.471618 10.050188 10.989039 11.061367 10.981926 12.484692