Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy01g01118 ATGGGGGAAAATGGAGGAATTAGGAGCAGCTTTAGTAGTGATAATACTTTCATATCAAAATTTAAAGCTTTGAATATCAGTCAGAAAAAATTAGCAGTAAGAGGAGAAGAAGATTCCTTTTCCAACAACTACCCATCATCAACTTCTCCCAATAATATTATTGAAAAGATTCCACAATGTTTCAATTCAATGGAGCATTATTTTGGAAGTTTCAAGTACCATTTACTAGAAGAAACAAGAACTCAATTATGCTCAAGCATGAACCCTATTTCCAAATCTCCATGTGTTGAAGTAATTTCAATCAAAGAAATCAAACCCTATGGCAAAGGATTTTTCAACATCCACCTTAGAGATTGCAAAGACTGTCCCACAATCTTAATGCCTGGAAATATATTTATCTTGTCTAATGTCAAACCTTATGTTGTCTCTGATTTGGAGAGAGACAATAATAATCCCAAATCATGGACTTTTGCAACAAAATTTCGGGCACAAGGCAACAATTTAGAGGAGGAATTTTTGTCCTATAATGACCCCACTCATTTTAGTGTCAAAACATGGAACAAAGATTTTGAGATTCCAATGGATAAAAAAACTAAGAATAAGCCAATGTTTCTTGTGATTTTGGTGAATGTTCTTTCTAATATAAGGATATGGAATGCATTGCACATGATAAAGAGAACTAGTAAACATTCTTCAGCTTCTTCTTCAATGATTTTCAATCAAGTTTTGGGACTCAATGATTCGTGTAACAATTTGGATTTTAGTTGTGATGCTTGTGAGGCAAAGGTTGGAATATCATTATCCCACAATGGTGATTTGCTTTCTACTCTAAATGAGCCCCAAGTTAGAGCTGTTCAAAGATGTCTTGAAAAGACAAGTTGTGCCCACAAATCTAGCATTGAACTCATCTGGGGTCCTCCTGGGACCGGCAAAACCAAGACGGTTGCTGTTTTGTTGCTTCAGTTTCGGAAGAATAACCATCGAGTGCTCACCTGTGCTCCCACCAACACTGCGATAATGCAGGTGGCATCAAGATTACTTATTTTAGTTAAAGAAATGCATGAGAAAGAGTATGGGTCAGGAGAGTTGTTTTGTAATTTGAGTGATATTCTTTTGATTGGGAATGAAACAAGGCTCAAACTTGAGGAATGTGATAAGTACATACATTTGGATTATAGAGTTGAAAGACTTGGAAAGTGCTTTTCTCAATTCAGTGGTTGGAGTCATTGTTTTGCTTCCATGGTTGACTTTCTTCAAGCTTCGTTATTTTCAAATTGGGTTGTTTCTAAGAATCTTAAGAAGCTATTTTCCACCAAATTGGAAGAAAAGGAAGAAGTTATGGAAAATAATGATGAGTATAAGAAGCTTTTGAAGGAGAGAAATGATTGTGTGTTGGTTTTGAAATCCTTGAAACATTCATTGAGTAGACTTAAACTTCCTCAAATTTCTTGCAAAAAAGATGTCGAAGATTTTTGCTTTGAGAATGCTTCTTTGTTCTTCTGCACGGTGTCGAGCTCGTTTAAGTTGTATTCGAGGCGGACAATGGCACCATTGGAGACATTGGTCATCGATGAAGCTGCACAGTTGAAGGAATGTGAGGCTGCAATTCCTTTGCAGTTTCCATCTATTAAACATGCTATCCTTATTGGTGATGAGTACCAACTGCCTGCTATGGTTGAAAGCAAAATTGCAGATGAAGCTGGGTTTGGGAGAAGCTTGTTTGAGAGACTAAGTTCATTGGGCCATCAAAAGCATCTTCTCAATGTTCAACACAGGATGCATCCATCTATAAATTATTTTCCAAACTCAAAATTCTATGCTAACAAAATCGTAGATGGTCCTAATGTCAAAACCAAGGCCTATGAGAAAAAGTTTCTTCATGGACCTATGTTTGGTTCATATTCTTTCATAGATATAAATGAGGGAAAAGAAGAAAAAGATGGCATTACACAAAGTTGGAAAAATATGGTAGAGGTTGATGTTGTTGGGAAAATTATTCACAATTTGTACAAAGCATTATGTGTTGATCGTCACTCAAAAGAGAAGATTAGCGTTGGTGTGGTTTCACCTTATTTAGCCCAAGTAGAAGCCATTAAAGAAAACATTGGGAGGGATTATAGTAACTGTAGTAGCTTTAATGTCAAAGTAAGCTCAGTTGATGGGTTCCAAGGTGGGGAGAAAGATATCATTATCATTTCTACCGTTCGATCAAATAGAGGCTCGTCGATCGGGTTTTTATCTAATAATCAAAGAACAAATGTCGCTCTTACACGAGCTAGATATTGTTTATGGATATTGGGGAACTTCACAACATTATCAAATAGTGATTCTATTTGGGGAGAATTGGTTTTTGATGCCATGAAACGTGGTTGTTTCTTCCAAGCTAATGAAGATAGGGACTTGGCCAACGTAATGTCTAGTTGGAAGATGGATAAGAAAATATGTATCGATCATTTAGCCGTTGAAAAATTGATCGGCTTACAAGGAAAGAGTACTTCGAAGCATGAAAATGAATTACTTGATATAGATCACGATGTTTTAATAATGGCTAAAGGACCAATTACTCGTTCAAGGGCGAAGGAGCTATTACTTACATTCCCTTCAAGCTCACGTTTGAGCCATGATGAACACTCCTTCGAGGACAAAGAAGATGGAAATTAA 2661 36.49 MGENGGIRSSFSSDNTFISKFKALNISQKKLAVRGEEDSFSNNYPSSTSPNNIIEKIPQCFNSMEHYFGSFKYHLLEETRTQLCSSMNPISKSPCVEVISIKEIKPYGKGFFNIHLRDCKDCPTILMPGNIFILSNVKPYVVSDLERDNNNPKSWTFATKFRAQGNNLEEEFLSYNDPTHFSVKTWNKDFEIPMDKKTKNKPMFLVILVNVLSNIRIWNALHMIKRTSKHSSASSSMIFNQVLGLNDSCNNLDFSCDACEAKVGISLSHNGDLLSTLNEPQVRAVQRCLEKTSCAHKSSIELIWGPPGTGKTKTVAVLLLQFRKNNHRVLTCAPTNTAIMQVASRLLILVKEMHEKEYGSGELFCNLSDILLIGNETRLKLEECDKYIHLDYRVERLGKCFSQFSGWSHCFASMVDFLQASLFSNWVVSKNLKKLFSTKLEEKEEVMENNDEYKKLLKERNDCVLVLKSLKHSLSRLKLPQISCKKDVEDFCFENASLFFCTVSSSFKLYSRRTMAPLETLVIDEAAQLKECEAAIPLQFPSIKHAILIGDEYQLPAMVESKIADEAGFGRSLFERLSSLGHQKHLLNVQHRMHPSINYFPNSKFYANKIVDGPNVKTKAYEKKFLHGPMFGSYSFIDINEGKEEKDGITQSWKNMVEVDVVGKIIHNLYKALCVDRHSKEKISVGVVSPYLAQVEAIKENIGRDYSNCSSFNVKVSSVDGFQGGEKDIIIISTVRSNRGSSIGFLSNNQRTNVALTRARYCLWILGNFTTLSNSDSIWGELVFDAMKRGCFFQANEDRDLANVMSSWKMDKKICIDHLAVEKLIGLQGKSTSKHENELLDIDHDVLIMAKGPITRSRAKELLLTFPSSSRLSHDEHSFEDKEDGN* 887
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12783598 12789230 - Chy1G011180.1 Chy01g01118 218299

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy01g01118 886 Coils Coil 439 459 - -
Chy01g01118 886 PANTHER OS04G0582700 PROTEIN 420 814 - -
Chy01g01118 886 CDD SF1_C_Upf1 593 783 IPR041679 -
Chy01g01118 886 PANTHER DNA2/NAM7 HELICASE FAMILY 52 420 IPR045055 -
Chy01g01118 886 Gene3D - 592 806 IPR027417 -
Chy01g01118 886 PANTHER DNA2/NAM7 HELICASE FAMILY 420 814 IPR045055 -
Chy01g01118 886 Pfam AAA domain 277 562 IPR041677 GO:0004386
Chy01g01118 886 Pfam Domain of unknown function (DUF6469) 94 225 IPR045529 -
Chy01g01118 886 PANTHER OS04G0582700 PROTEIN 52 420 - -
Chy01g01118 886 Pfam AAA domain 570 768 IPR041679 -
Chy01g01118 886 Gene3D - 190 590 IPR027417 -
Chy01g01118 886 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 272 789 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy01g01118 - - - csv:101220392 1397.49
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g01118 Chy-Chr1:12783598 Chy10g00088 Chy-Chr10:2289100 0 dispersed
Chy01g01118 Chy-Chr1:12783598 Chy06g02112 Chy-Chr6:25330110 7.54E-48 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g661 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda05g00688 . . Bpe03g00750 . Bma14g00130 . . . . . . . . . . . . . . . . . . . . . . . . . Chy01g01118 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002142 0 0 2 0 0 4 0 4 3 3 3 4 1 2 4 0 4 0 0 4 5 2 3 3 2 4 0 3 2 0 62
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy01g01118 Chy_Chr01 FPKM 7.121464 7.606075 6.046431 6.319889 7.066932 7.381923 7.605202 7.271764 7.186347 6.806187