Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy01g01120 ATGGGAAAGAGACGAGAGCGTCGCCTTGCAGCTCTCAGTAACGTCGGTCGCCGTGTCAAACTCGATCTTTTCGCCGAGCCCTCTGGAGATTTAGATGGCTCTGATGGACATGAAGAAGTTGGAGGGGATATAGATACAAGACAGACAACCAAGTTACCTAAATCAGCTTCCTCTTCAGGTCACCAAACCCAAAATCCCTTGCTGTTACTTGAGCAATATAGTGATGATGATGTTGCTGGCGACTTGAATAAAAATTCAGATCGGGATGGACAAGATGATTTGTTATGTCAGCGCAATGATGAGGTTGCTGCAGTTCCTACTGAGGGATGTGAGAATATGGATACAAATGTTGGTGAAGACCTCATTGCTGAAAAGACTGTTCAGGAAGAATCAGTTGAAATTTCTGAGAACATGGAGAGTAAAGATGAAGCAAAAACTGACACTAAGGGCTTGGGATATTTAAGCAAGGAAAGTGATCTGGTTCAAACATCTGTACCAACCATATCTAATGTACAAGTCTCAGGTGATGTTATTTCAGGATGGAGGATTGTTATGCATGAGGAGAGCCATAATTATTATTACTGGAATGTTGAAACTGGGGAAACTTCATGGGAAGTACCCGATGTTGTTTCGACTCAGGCTCAGCCTACTCAATCGACCACCGATATTAAAACATCTCCTACTCAATTTCCAGAGAATGTTACAGTGTTTAAACAGGAATCTGGTTTAACTAATGGTGGGAAGTTAGGTACTTTTTCAGCAGAAAGCACAGGTTACAAGAATAGTGTTCCAGTAACTGCAAGTCAGGGTTCTGAGGTTGACCAAAGCTATGCTGCCTTAAGTACCTGTTCAAATGATGTGAATATAACAAAAGCTGCTTCTGAGATCTATGTTGATTACACGGTGACTAATGAAGAACTGAAATCATCAGGGTTGGATCTTCCTTCCCATCTTCTGACCTGGAGTGCGAGCTTGTCAGAGAAATTGAAATCATTACAAAAGTCTGGAGGTCATGAATGGACATCTAAGTACATATTGGAAACTCAAGTTAGACTTTCAGATTTTATGTCACTGATGCCCTATAAGACATTGTTGGTTCCATTTTGGGAACACTCAGCAAGGAAGCTTAAACAGATTGAAGATGACGTTAACAAAGAAATTTATCAAACTGCTGCTGTATCATCCCAATTGGATGAAGCCAAGGCTACTGATAGTCCAAAGATTGTAAGAGTGGAGACATTTCAGGAAAGGTCGAATGTTGAGTCTGAAGTAGAGAGAGTGACAAACAGTTGTGTCTCTGCTTTGGAGCATTCTCATTTGCCTACTGATTCTGCTTCTTTGAAACTCCAAGGGGGCCAAAGCCAAGTAACTATCATTGCAAATGAAGAAAATAGTTCACCATCTAAAGCCATTGACCAGTTAGGAAACTCTACTGTTGCGACTGAGCATGCAAGTGAAGTTGCAACTGATGAAATGGCTTCCAAGAGTGGTGTACATTCTGTGGAAGATGTCGACATGGAGGTGGATATGGAAGTTGAAGATGCTAGTTCTGCAGGTAACTTGATGATGGCTGGTACGTCAGATATGTGCGTAACTTTCTTGGAGCAACAACTTCAGCCAGATCCACCAGCCCATCCAAATCTTTCCTCTGGATATGAATACATGTTATCAGAGGATGGCTCTATAGCACCACCGCCACCACCACCGGATGAGGAATGGATCCCCCCCCCACCACCTGATAACGAAGATGTTTCTCCACCCCTACCTGATGAGCCAGCTGAGCCATTATATCCTATGGCTCCATCTTATACCCAACTTGGGCAGCCTCTTTGTTACACCGAACCGTATCGAGTGTCCTACCCTGATTCTAGTATTAAGTATTATGCACATCCTGCCCCTGAAGTTGTCCCTACTGCAGACTTCTATGGACATCCGGAAGCATGTAATGTTGTTTTGCAAGCACCATTTTACTATGAGCCAGTTCCAAATTCGCATACCGATTCTGCTTCCATAGTTGTAAATGGTGTTTTGCCTGAAGGTTATGGTATTCTTCAAAATGCAACAGCTACTCTTCCCGTCTTTAGTACATCAGAGTCTTCTCAGTTGCATGTTGATTCCTCATCTGCAAGATTGCATCCTTCCTCTGTTCAATATGGATCTTCCGAAGCAGCAAATATGAATACTGCTTCTGCTGCAGATGAAATTGACAAGAGACGTGGAGAGACCACAACAGCCTCCTTCCGAGCGTCTACTTCAGGTTCCCCAACTAATGATGTTCTGTCAACAACTAAAGCTGTTACGGATTCTTCCTCTGTTGCTAATACATCCGCAGTTTCCAAGGTTCAACCAAAAGCTCTGCGCAGCAAAAAGCGGACAGTTACAGTTGCTCCCTCCTTGAGATCAAATAAGAAAGTTTCAAGTTTGTTGGACAAGTGGAAGGCAGCAAAAGAAGAACTCGAAGATGAGGAAGAACCAGAAAATGCTTATGAGATTCTAGAGAGGAAACGAGAAAGGGAAATAAAGGAATGGCACGCCCAGCAGATTGCCAGTGGGGATGCAAAAGAAAATGCCAACTTTCAGCCTCTTGGGAGCGATTGGCGCGAGCGGGTAAAGCGAAGGAGAGCTCAATCATCAAGTGAAGTTACTCAATCCCCTGTTGAAGCACCCACAGATGGAAACCAGCAACCTGACTTGGCAGAAATCTCCAAAGATCTCCCCTCAGGATGGCAGGCATATTGGGATGAGTTCTCGAAACAGGTGTATTATGGTAATGTTAACACCTCAGAAACGTCGTGGATGAAACCGAGCAAGTGA 2814 43.5 MGKRRERRLAALSNVGRRVKLDLFAEPSGDLDGSDGHEEVGGDIDTRQTTKLPKSASSSGHQTQNPLLLLEQYSDDDVAGDLNKNSDRDGQDDLLCQRNDEVAAVPTEGCENMDTNVGEDLIAEKTVQEESVEISENMESKDEAKTDTKGLGYLSKESDLVQTSVPTISNVQVSGDVISGWRIVMHEESHNYYYWNVETGETSWEVPDVVSTQAQPTQSTTDIKTSPTQFPENVTVFKQESGLTNGGKLGTFSAESTGYKNSVPVTASQGSEVDQSYAALSTCSNDVNITKAASEIYVDYTVTNEELKSSGLDLPSHLLTWSASLSEKLKSLQKSGGHEWTSKYILETQVRLSDFMSLMPYKTLLVPFWEHSARKLKQIEDDVNKEIYQTAAVSSQLDEAKATDSPKIVRVETFQERSNVESEVERVTNSCVSALEHSHLPTDSASLKLQGGQSQVTIIANEENSSPSKAIDQLGNSTVATEHASEVATDEMASKSGVHSVEDVDMEVDMEVEDASSAGNLMMAGTSDMCVTFLEQQLQPDPPAHPNLSSGYEYMLSEDGSIAPPPPPPDEEWIPPPPPDNEDVSPPLPDEPAEPLYPMAPSYTQLGQPLCYTEPYRVSYPDSSIKYYAHPAPEVVPTADFYGHPEACNVVLQAPFYYEPVPNSHTDSASIVVNGVLPEGYGILQNATATLPVFSTSESSQLHVDSSSARLHPSSVQYGSSEAANMNTASAADEIDKRRGETTTASFRASTSGSPTNDVLSTTKAVTDSSSVANTSAVSKVQPKALRSKKRTVTVAPSLRSNKKVSSLLDKWKAAKEELEDEEEPENAYEILERKREREIKEWHAQQIASGDAKENANFQPLGSDWRERVKRRRAQSSSEVTQSPVEAPTDGNQQPDLAEISKDLPSGWQAYWDEFSKQVYYGNVNTSETSWMKPSK* 938
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12815654 12823047 + Chy1G011200.1 Chy01g01120 218301

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy01g01120 937 CDD WW 179 208 IPR001202 GO:0005515
Chy01g01120 937 ProSiteProfiles WW/rsp5/WWP domain profile. 903 937 IPR001202 GO:0005515
Chy01g01120 937 MobiDBLite consensus disorder prediction 482 503 - -
Chy01g01120 937 Gene3D - 176 216 - -
Chy01g01120 937 SMART ww_5 904 937 IPR001202 GO:0005515
Chy01g01120 937 SMART ww_5 176 209 IPR001202 GO:0005515
Chy01g01120 937 ProSitePatterns WW/rsp5/WWP domain signature. 909 935 IPR001202 GO:0005515
Chy01g01120 937 ProSitePatterns WW/rsp5/WWP domain signature. 181 207 IPR001202 GO:0005515
Chy01g01120 937 MobiDBLite consensus disorder prediction 846 903 - -
Chy01g01120 937 SUPERFAMILY WW domain 167 209 IPR036020 GO:0005515
Chy01g01120 937 MobiDBLite consensus disorder prediction 538 594 - -
Chy01g01120 937 CDD WW 906 935 IPR001202 GO:0005515
Chy01g01120 937 Gene3D - 899 937 - -
Chy01g01120 937 MobiDBLite consensus disorder prediction 877 897 - -
Chy01g01120 937 PANTHER OS06G0298400 PROTEIN 1 937 - -
Chy01g01120 937 MobiDBLite consensus disorder prediction 25 65 - -
Chy01g01120 937 MobiDBLite consensus disorder prediction 31 45 - -
Chy01g01120 937 MobiDBLite consensus disorder prediction 48 65 - -
Chy01g01120 937 MobiDBLite consensus disorder prediction 561 594 - -
Chy01g01120 937 MobiDBLite consensus disorder prediction 744 761 - -
Chy01g01120 937 Coils Coil 802 822 - -
Chy01g01120 937 MobiDBLite consensus disorder prediction 718 761 - -
Chy01g01120 937 ProSiteProfiles WW/rsp5/WWP domain profile. 175 209 IPR001202 GO:0005515
Chy01g01120 937 Pfam WW domain 905 935 IPR001202 GO:0005515
Chy01g01120 937 Pfam WW domain 179 207 IPR001202 GO:0005515
Chy01g01120 937 SUPERFAMILY WW domain 902 935 IPR036020 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy01g01120 K24774 FNBP4; formin-binding protein 4 - csv:101219916 1655.96
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g719 . . Bda07g00423 Bda09g00442 . . . . . . Cma01g01060 Cma09g01029 Car01g00934 Car09g00932 Sed04g3626 Cpe06g00836 Cpe02g00836 Bhi09g01804 Tan01g3218 Cmetu01g2692 . . Mch11g1304 . . . . . . . . . . . . Lsi02g01808 . . . . . . . Bpe11g00598 . . Bma14g00671 . Cmo01g01101 Cmo09g01031 . . . . . . . . . . . . . Cla09g02097 Cam09g2183 Cec09g2250 . . . . . . Chy01g01120 Cme01g00868
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004218 2 2 0 1 1 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 3 4 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy01g01120 Chy_Chr01 FPKM 82.39724 88.41571 77.488869 79.935463 35.60701 36.330883 33.820431 75.23452 72.936691 73.453308