Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy01g01123 ATGATCAATTCTGTTTATTTCGTTTCGGGTTCGTCATGTAACTGTGGTGGTGGGACTTCTTTGTTTATCCCAAACTCGTTGGTGGAAGAAGATGAATCAGTTGTGGATGTTAGAGATGATAATTCTGTTGCTCTCCCTGCATCTTTCTGGGTTAGATTAGCAATGAGAGTGTCTAGAGCCAGGTGGTTCATTTTCTTACGAAGGGTATTTCACTACCAGAATGGATCAAGATCAAATCTCGGGTCTGATCCTTTCAATTCTAGCTCGTGGATGGCTGTGGAGCTGGTAGCTATGGTGTTTCAGCTCTCCATCACAGTGTTTGTTCTTGCCATTTCAGAGGCGGAGAATCCAATTTGGCCTATGAGACTGTGGATAGTTGGTTATGATCTTGGCTGCATTCTTAGTTTGCTGCTTCTCTATGGGCGATATTGGCATCTTTATTTAATGCATGGAGAGCGTGTTGGCCTTTCTGACACCGAGCAGCGGAGGAGCAGTCAAGCATCAAGGAGCTTACATTTGATGAACAAATGCCGAACGTCTCTTGAACTTTTCTTCGCAATATGGTTTGTAATGGGTAATGTTTGGATCGTTGATTCTCGCTTCAGTTCTTTTCAAAGAGCTCCCAAGCTTCATTTGCTATGTGTCTTCCTGTTAGTTTGGAATGCCATCTGCTACTCCTTTCCCTTCATTCTTTTTCTGTTGCTATGTTGTTGTGTGCCATTGGTTAGTAGCCTTCTAGGATACAACATTAGCATGGCATCAACCGACAAAGCAGCATTAGATGATCAAATATCTCAGCTACCGTGCTGGCGATATAAAGTGAGCTCAATGCAACCTGATAGTAACGAGGGACTTCCAAAAGAGGATCCAGAATGTTGCATTTGCCTTGTCAAGTACAGAGATGAAGAAGAAGTAAGGCAGTTACCTTGTTCCCATTTCTTCCATCTCAGACGCATAGAATGTTATCGTCATGCTCATGCTTGCTTAAGCATTTTTTTACATTGTAGTCTTGTTGTCCATGAAGTTACTCTATAG 1035 42.42 MINSVYFVSGSSCNCGGGTSLFIPNSLVEEDESVVDVRDDNSVALPASFWVRLAMRVSRARWFIFLRRVFHYQNGSRSNLGSDPFNSSSWMAVELVAMVFQLSITVFVLAISEAENPIWPMRLWIVGYDLGCILSLLLLYGRYWHLYLMHGERVGLSDTEQRRSSQASRSLHLMNKCRTSLELFFAIWFVMGNVWIVDSRFSSFQRAPKLHLLCVFLLVWNAICYSFPFILFLLLCCCVPLVSSLLGYNISMASTDKAALDDQISQLPCWRYKVSSMQPDSNEGLPKEDPECCICLVKYRDEEEVRQLPCSHFFHLRRIECYRHAHACLSIFLHCSLVVHEVTL* 345
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12866768 12868794 - Chy1G011230.1 Chy01g01123 218304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy01g01123 344 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 28 322 - -
Chy01g01123 344 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 248 337 IPR013083 -
Chy01g01123 344 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 28 322 - -
Chy01g01123 344 SUPERFAMILY RING/U-box 285 316 - -
Chy01g01123 344 Pfam RING-like zinc finger 291 316 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g01123 Chy-Chr1:12866768 Chy03g01171 Chy-Chr3:14906893 1.61E-43 dispersed
Chy01g01123 Chy-Chr1:12866768 Chy01g01124 Chy-Chr1:12873412 2.69E-147 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy01g01123 - - csv:101219675 593.578