Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy01g01124 ATGATTCATTCTGGTTTCTTCCTTTCGGGACCATCATTTAATTCTGATGCTACTACGTCTTTCATATCAATTTCGGTGTCTGGAGAAGATGGCGCTATGGCTGATGATATCAGAAACGAAGCATCTGATTCTGTCCCCCCTTCCTTTTGGGTTAAAATGGCGATGAAAATATCTAGAGCTAGATGGTTTATTTTTTTTAGAAGAGTTTTCCACTACCAAAACGGATCGAGATCTGATCTTGGGCCTAATCCTTTCAATTCGGGTTTGTGGATGGCGATGGAACTTGTAGGTTTGTTGTTTCAGCTAATTATCTCAGCGTTTACTCTTGCCATTTCACAGTCTGAAAAGCCAGTTTGGCCTATGAGGTTGTGGATAGGTGGTTATGATCTCGGCTGTGTTCTTAGCTTATTGCTTCTCTATGGTCGCCATCGGTATCATTATCTAATGCAGAGAGATGGTAACAGTCTTTCAGATATTGAACACGAACAGCAAAGGACCAATGAATCATCAAGGTATTCACATTTGATGAACCGATGCCGCACGTCTCTCGATCTTTTCTTTGCGATATGGTTTGTAATGGGCAATCTTTGGGCCTTCGATTCTCGCTTAGCCTCGTTCCAGAGAGCTCCCAAGCTACATCTACTATGCAGCTTCCTGCTAGTTTGGAATGCCATCTGCTACTCTTTCCCATTTATTCTGTTTCTGCTGCTATGTTGCTGTGTGCCATTGATTAGTAGCCTTACAGGGTATAACATTAACATGGGATCAACTGAAAAAGGAGCATCAGATGATCAAATTTCCCAGCTACCTTGCTGGAGATACAAAGCAGTTGAAGCCAACATCAACCCCAGAAGTCAACTCGACAATAGCAATACAGGACTTCTAAAAGAGGATCCAGTAAGTAATAATTCTCTTCCTGGTTTTGAAAAAACTGCAATAGAAAATTCAAATAGAAAGAGCGATGGGGGATTAAAATACTTCCGATTGCCTTCGGTTTTGCAGGAATGTTGCATTTGCCTTGCCAAGTATATAGACAAGGAAGAAGTGAGACAGTTACCTTGTTCCCATGTGTTTCATCTCAGGTGTGTAGATAAGTGGCTTGCTATTACATCTTCATGCCCTCTCTGTAAGCAACAACTTCAAAGATAG 1149 41.43 MIHSGFFLSGPSFNSDATTSFISISVSGEDGAMADDIRNEASDSVPPSFWVKMAMKISRARWFIFFRRVFHYQNGSRSDLGPNPFNSGLWMAMELVGLLFQLIISAFTLAISQSEKPVWPMRLWIGGYDLGCVLSLLLLYGRHRYHYLMQRDGNSLSDIEHEQQRTNESSRYSHLMNRCRTSLDLFFAIWFVMGNLWAFDSRLASFQRAPKLHLLCSFLLVWNAICYSFPFILFLLLCCCVPLISSLTGYNINMGSTEKGASDDQISQLPCWRYKAVEANINPRSQLDNSNTGLLKEDPVSNNSLPGFEKTAIENSNRKSDGGLKYFRLPSVLQECCICLAKYIDKEEVRQLPCSHVFHLRCVDKWLAITSSCPLCKQQLQR* 383
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12873412 12874949 - Chy1G011240.1 Chy01g01124 218305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy01g01124 382 ProSiteProfiles Zinc finger RING-type profile. 336 377 IPR001841 -
Chy01g01124 382 SUPERFAMILY RING/U-box 335 380 - -
Chy01g01124 382 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 28 381 - -
Chy01g01124 382 CDD RING-H2_RNF111_like 335 377 - -
Chy01g01124 382 SMART ring_2 336 376 IPR001841 -
Chy01g01124 382 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 311 382 IPR013083 -
Chy01g01124 382 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 28 381 - -
Chy01g01124 382 Pfam Ring finger domain 335 377 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g01124 Chy-Chr1:12873412 Chy03g01171 Chy-Chr3:14906893 6.45E-53 dispersed
Chy01g01123 Chy-Chr1:12866768 Chy01g01124 Chy-Chr1:12873412 2.69E-147 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy01g01124 - - csv:101217150 662.144