Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy01g01137 ATGACGGACAAAGGTCGGCCATTGCCTAAATTTGGTGAGTGGGATGTTAATGATCCGACATCGGCCGAGGGTTTCACCGTGATTTTCAACAAAGCTAGAGATGAGAAGAAAACAGGCGGCAAACCTGATTCACCTGGAAAAGTTGATGCACATGGCAGGAATGCACCAGATCCTGCCAAGGCACCTCCTAAGAAATGGCTTTGCTGTATCCAAAGTCCCACTGCTGAATCTTAA 234 47.44 MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAHGRNAPDPAKAPPKKWLCCIQSPTAES* 78
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 13174108 13175723 - Chy1G011370.1 Chy01g01137 218318

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy01g01137 77 PANTHER RPM1-INTERACTING PROTEIN 4-LIKE 1 76 - -
Chy01g01137 77 MobiDBLite consensus disorder prediction 30 54 - -
Chy01g01137 77 MobiDBLite consensus disorder prediction 1 20 - -
Chy01g01137 77 Pfam Cleavage site for pathogenic type III effector avirulence factor Avr 3 38 IPR008700 -
Chy01g01137 77 MobiDBLite consensus disorder prediction 30 66 - -
Chy01g01137 77 PANTHER RPM1-INTERACTING PROTEIN 4 (RIN4) FAMILY PROTEIN 1 76 IPR040387 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy01g01137 - - - csv:101212015 158.688
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g01137 Chy-Chr1:13174108 Chy06g01893 Chy-Chr6:22795344 8.65E-25 dispersed
Chy01g01137 Chy-Chr1:13174108 Chy06g00353 Chy-Chr6:2358321 2.75E-06 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g682 . . . . . . . . . . . . . . Sed07g2758 . . Bhi09g01783 Tan01g3200 Cmetu06g0507 . . . . . . . . . . . . . . Cone15ag1275 . Csa03g00419 . . . . . . . . . . . . . . . . . . . Bhi11g00469 . . . . . . . . . . . . . . . Chy01g01137 Cme01g00893
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000283 4 7 1 2 4 5 8 5 5 5 5 5 8 3 5 7 1 5 8 0 5 5 5 1 5 5 4 9 5 4 141
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy01g01137 Chy_Chr01 FPKM 3.467536 3.918295 2.154779 1.93052 9.151475 9.728205 8.816432 2.083172 2.054641 2.284262