Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy01g01142 ATGTCTCTGGGCTACGCAGAGAAGCTTTCGTACATAGAAGACGTAGGAAAAGTGGGAATGACAGAACATTTTGACCCACCTCACGTCTTAGAAGAAAAGATTGAACGACTAACTACGATGATACAAAAGAGTAAGCATTTAGTAGTGTTTACCGGTGCAGGAATATCAACCTCTTGTGGTATACCTGATTTTCGAGGTCCTAAAGGAATATGGACTCTTCAGCGTGAAGGTAAAGCCTTACCAGAAGCATCACTGCCGTTTCATCGTGCAATGCCAAGCATTACTCATATGGCTTTGGTTGAGTTGGAGAAGGCTGGTATATTGAAGTTCATCATTAGTCAGAATATTGATGGCCTCCATCTTCGATCTGGTATACCAAGAGAGAAGCTTGCTGAATTACATGGGAACTCATTCATGGAAACTTGTCCATCATGTGGAGCTGAGTATTTGAGGGATTTTGAAGTAGAAACTATCGGATTGAAGGATACTTCACGGAGATGTTCTGATGCCAATTGTGGAGCTAAACTAAGGGATACAGTTCTTGACTGGGAGGACGCATTGCCTCCAAAGGAGATGAATCCAGCTGAGAGACACTGCAGGATGGCTGATATTGTATTGTGTCTAGGGACGAGCTTGCAGATCACTCCAGCATGCAACCTTCCTCTGAAATCACTTCGTGGTGGGGGGAAGATTATAATTGTTAATCTTCAGAAAACACCAAAGGATAAAAAAGCAAGTTTGGTTATCCATGGTCGCGTAGATAAGGTCATTGCAGGCGTAATGGAGATCCTAAATATGCAAATTCCCCCTTTTGTTAGAATTGATCTTTTCCAGATTATACTTTCTCAAGGCTTGAGTCTTGATAAGAAATTTGTTAACTGGACCCTTCGAATATTAAGCATACATGGACAGAAAGCTCCATTACCATTCATCAAATCTGTTGAGATTTCGTTCTTGGATAATCAAGATTACAAATCAACTACTTTGCAAAGCCAACCGTTTCTCCTTAAAAGAAGAACGGTAAAGGAAAAGTCATTTGAAATGGTTTTGAGGCTCAATTTCAGCGAAGGTTGTGGTAGTTCACATGCTGAAATTAATGTCCCCGTTGATTTTAAGGTCTCTGCAGACTGTATGAATCTCGATAAGGATGTTGTATTTCAGAGACTAATAGAGGAGACAGTTCAAGATTCCTTCTGCGGAAAAAGTGCAGTTATAGAGCGAAAAGCCATCTCAATCCCAAAAAGTGAGGTCACTGTATATGCCATCGTAACTAACATTATTAGATACACCAAAAGTTTGAAAACATTAGCAATAGATTCACTTAGTAATGGCGATGTCAAACGACAACGAGAAAGTGTAAATGGTTCTGCCACATCTAGGAAGCGTTCAAAACGACAGAAGCGAAAATATAGACATTAG 1419 40.31 MSLGYAEKLSYIEDVGKVGMTEHFDPPHVLEEKIERLTTMIQKSKHLVVFTGAGISTSCGIPDFRGPKGIWTLQREGKALPEASLPFHRAMPSITHMALVELEKAGILKFIISQNIDGLHLRSGIPREKLAELHGNSFMETCPSCGAEYLRDFEVETIGLKDTSRRCSDANCGAKLRDTVLDWEDALPPKEMNPAERHCRMADIVLCLGTSLQITPACNLPLKSLRGGGKIIIVNLQKTPKDKKASLVIHGRVDKVIAGVMEILNMQIPPFVRIDLFQIILSQGLSLDKKFVNWTLRILSIHGQKAPLPFIKSVEISFLDNQDYKSTTLQSQPFLLKRRTVKEKSFEMVLRLNFSEGCGSSHAEINVPVDFKVSADCMNLDKDVVFQRLIEETVQDSFCGKSAVIERKAISIPKSEVTVYAIVTNIIRYTKSLKTLAIDSLSNGDVKRQRESVNGSATSRKRSKRQKRKYRH* 473
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 13259451 13308359 + Chy1G011420.1 Chy01g01142 218323

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy01g01142 472 Gene3D - 37 262 - -
Chy01g01142 472 Pfam Sir2 family 52 75 IPR003000 GO:0070403
Chy01g01142 472 Pfam Sir2 family 86 216 IPR003000 GO:0070403
Chy01g01142 472 ProSiteProfiles Sirtuin catalytic domain profile. 35 269 IPR026590 -
Chy01g01142 472 MobiDBLite consensus disorder prediction 448 472 - -
Chy01g01142 472 SUPERFAMILY DHS-like NAD/FAD-binding domain 5 291 IPR029035 -
Chy01g01142 472 Gene3D - 135 184 - -
Chy01g01142 472 CDD SIRT7 45 252 - -
Chy01g01142 472 PANTHER NAD-DEPENDENT PROTEIN DEACETYLASE SRT1 1 470 - -
Chy01g01142 472 PANTHER NAD-DEPENDENT PROTEIN DEACETYLASE SIRTUIN-(6/7) FAMILY MEMBER 1 470 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy01g01142 K11416 SIRT6, SIR2L6; NAD+-dependent protein deacetylase sirtuin 6 [EC:2.3.1.286] - csv:101212255 907.131
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g01142 Chy-Chr1:13259451 Chy11g00025 Chy-Chr11:348790 1.35E-23 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g671 . . . . . . . . . . . Cma09g01014 . . Sed04g3651 Cpe06g00822 . Bhi09g01778 Tan01g3196 Cmetu01g1518 . . Mch11g1279 . . . . . . . . . . Cone14ag1221 Cone15ag1242 Lsi02g01823 . . . . . . . . . . . . . Cmo09g01017 . . . . . . . . . . . . . Cla09g02081 Cam09g2169 Cec09g2234 . . . . . . Chy01g01142 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006785 1 1 0 1 1 1 1 2 2 1 1 1 1 0 1 1 1 2 1 2 1 1 1 2 2 1 1 2 2 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy01g01142 Chy_Chr01 FPKM 34.898727 35.239006 41.071095 40.753647 11.910337 10.847484 12.251497 27.949165 30.579086 34.13052