Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy01g01154 ATGGGTAACCAAGACGCTAGACAACCACTGTTACCAACATCATCTAATACTTTAGAAACAAGGGTAATAAATATTCCTAGAAGCAAAAGACGATTGAGGCGCACCAAGAGTGCTCCTCATGCAAATTCTCCTACTGAGATCACCCACACCAGCAACGTGCCGGCCCCAGGTCCAGTTCCACGTTCAGGATTAATATTCGGAAATCTACACCCGAGTTTCAGAAGAGTAGCCTTAGTTTTAATAACATATCTGGGTATAGGAACTTTATGTTTTTACCTTGTCAGGCACCAAATCAAAGGGGAGAAAACAAACAGAATAGTTGATGCCATATATTTCACTATTGTGACAATGACAACTGTTGGGTATGGAGATCTTGTCCCAAACAGTCCTTCCACAAAACTGCTAGCTTGTGCTTTCGTTTTCACAGGAATGGCCCTAGTTGGCCTAATACTGAGCAATGCAGCCGATTATTTGGTAGAGAAGCAGGAAATCTTGCTATTTAAAGCCTTCCATATTGACCAAAATGGCCATTGTGACATTTCAAAAGAAATCGATACTAATAAAGCTAGAAACAAGTGCATAGTGGTGTTTCTCCTTCTTCTTTTGTTCATCATTTCTGGGACTGCCTTTCTAGTTACCATTGAGAAGTTAGATTTTATTGATGCCTTTTATTGTGTATGTTCTACCATTACAACGCTAGGCTATGGAGATCAAAGCTTTTCGACCAAGTGGGGACGTGTGTTCGCCATTTTCTGGATCTTGATAAGTACCATCACTCTAGCTCAGTTTTTCCTTTACATTGCTGAGCTAAACACTGAAAGAAGGCAAAAGTCTCTTGTCAAGTGGGTTCTAAGTAAAAAGGTGACAGACATAGACCTTGAGGTTGCAGATATCGATGATGACGGTGTTGTCGGGGCTGCAGAATTTGTGATATACAAGCTGAAGGAGATGGGGAAAATTACTGAAGATGACATTTCACCTGTGTTGAATGAATTTGAGAATCTTGATGTTGATCAATCAGGAACACTGTCCATATCTGATATAACACTCGCTCAATTATCTTAA 1065 40.28 MGNQDARQPLLPTSSNTLETRVINIPRSKRRLRRTKSAPHANSPTEITHTSNVPAPGPVPRSGLIFGNLHPSFRRVALVLITYLGIGTLCFYLVRHQIKGEKTNRIVDAIYFTIVTMTTVGYGDLVPNSPSTKLLACAFVFTGMALVGLILSNAADYLVEKQEILLFKAFHIDQNGHCDISKEIDTNKARNKCIVVFLLLLLFIISGTAFLVTIEKLDFIDAFYCVCSTITTLGYGDQSFSTKWGRVFAIFWILISTITLAQFFLYIAELNTERRQKSLVKWVLSKKVTDIDLEVADIDDDGVVGAAEFVIYKLKEMGKITEDDISPVLNEFENLDVDQSGTLSISDITLAQLS* 355
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 13481172 13482412 - Chy1G011540.1 Chy01g01154 218335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy01g01154 354 SUPERFAMILY EF-hand 281 349 IPR011992 -
Chy01g01154 354 ProSitePatterns EF-hand calcium-binding domain. 297 309 IPR018247 -
Chy01g01154 354 Gene3D - 70 164 - -
Chy01g01154 354 Gene3D - 177 292 - -
Chy01g01154 354 PANTHER POTASSIUM CHANNEL, SUBFAMILY K 21 348 IPR003280 GO:0005267|GO:0016020|GO:0071805
Chy01g01154 354 SUPERFAMILY Voltage-gated potassium channels 70 168 - -
Chy01g01154 354 Pfam Ion channel 199 270 IPR013099 -
Chy01g01154 354 Pfam Ion channel 79 159 IPR013099 -
Chy01g01154 354 PANTHER TWO PORE POTASSIUM CHANNEL A 21 348 - -
Chy01g01154 354 SUPERFAMILY Voltage-gated potassium channels 186 291 - -
Chy01g01154 354 MobiDBLite consensus disorder prediction 38 52 - -
Chy01g01154 354 PRINTS Two pore domain K+ channel signature 115 143 IPR003280 GO:0005267|GO:0016020|GO:0071805
Chy01g01154 354 PRINTS Two pore domain K+ channel signature 231 240 IPR003280 GO:0005267|GO:0016020|GO:0071805
Chy01g01154 354 MobiDBLite consensus disorder prediction 27 54 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g01154 Chy-Chr1:13481172 Chy12g00628 Chy-Chr12:8994580 6.68E-127 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy01g01154 K05389 - csv:101216032 662.144